| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4147192 = | 48 (0.850) | 3 (0.050) | 3/252 | NT | 6.3% | coding (1275/2184 nt) | PP_3651 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 4147238 = | 42 (0.760) | coding (1321/2184 nt) | PP_3651 | two‑component system sensor histidine kinase/response regulator | |||||
GAGGTCGGCGCGGATGTGGCAGGGCGCTTGCGGTAACTGCAGCTCGACCCGGATGCGCGCGCCAGTGACGGTGTCGAGCATGTCGGCCATGGCCTCCAGCCGAGGCCCGGCCTCGAACACCTGTGGGCTGAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4147327‑4147192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGA > NC_002947/4147238‑4147338 GAGGTCGGCGCGGATGTGGCAGGGCGCTTGCGGTAACTGCAGCTCGACCCGGATGCGCGCGCCAGTGACGGTGTCGAGCATGTCGGCCATGGCCTCCAGCCGAGGCCCGGCCTCGAACACCTGTGGGCTGAGG > 5:275427/1‑133GAGGTCGGCGCGGATGTGGCAGGGCGCTTGCGGTAACTGCAGCTCGACCCGGATGCGCGCGCCAGTGACGGTGTCGAGCATGTCGGCCATGGCCTCCAGCCGAGGCCCGGCCTCGAACACCTGTGGGCTGAGG < 6:275427/133‑1 CCATGGCCTCCAGCCGAGGCCCGGCCTCGAACACCTGTGGGCTGAGGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGATG > 3:57091/1‑149 CCTCCAGCCGAGGCCCGGCCTCGAACACCTGTGGGCTGAGGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGA > 1:316593/1‑145 CCTCCAGCCGAGGCCCGGCCTCGAACACCTGTGGGCTGAGGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGA < 2:316593/145‑1 GAGGTCGGCGCGGATGTGGCAGGGCGCTTGCGGTAACTGCAGCTCGACCCGGATGCGCGCGCCAGTGACGGTGTCGAGCATGTCGGCCATGGCCTCCAGCCGAGGCCCGGCCTCGAACACCTGTGGGCTGAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4147327‑4147192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGA > NC_002947/4147238‑4147338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |