New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4147192 =	48 (0.850)	3 (0.050)	3/252	NT	6.3%	coding (1275/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4147238 =	42 (0.760)					coding (1321/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator

CTGACCATCATCCGCTCGTCGCTGCACTTCCTGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGA  >  NC_002947/4147046‑4147338                                                                                                                                                   |                                                                                                                                                   ctgACCATCATCCGCTCGTCGCTGCACTTCCTGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGc                                                                                                                                                  >  1:215989/1‑149 (MQ=255)      catcatCCGCTCGTCGCTGCACTTCCTGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCt                                                                                                                                               >  4:347016/1‑147 (MQ=255)          atcCGCTCGTCGCTGCACTTCCTGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGc                                                                                                                                           <  4:302881/147‑1 (MQ=255)          atcCGCTCGTCGCTGCACTTCCTGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGc                                                                                                                                           >  3:302881/1‑147 (MQ=255)           tcCGCTCGTCGCTGCACTTCCTGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCca                                                                                                                                        >  7:260808/1‑149 (MQ=255)                      cTGCACTTCCTGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCa                                                                                                                                             >  6:113925/1‑133 (MQ=255)                      cTGCACTTCCTGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGa                                                                                                                             <  4:23332/149‑1 (MQ=255)                                tGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCt                                                                                                                   >  4:70941/1‑149 (MQ=255)                                tGCAGCGACCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTAAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCt                                                                                                                   >  5:28867/1‑149 (MQ=255)                                 gCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCt                                                                                                                                               <  2:16176/120‑1 (MQ=255)                                  cAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCg                                                                                                                 >  5:292993/1‑149 (MQ=255)                                        cccAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTg                                                                                                             >  2:139851/1‑147 (MQ=255)                                         ccAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTc                                                                                                                               >  8:171912/1‑128 (MQ=255)                                         ccAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTc                                                                                                                               <  7:171912/128‑1 (MQ=255)                                         ccAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAg                                                                                                          >  3:35237/1‑149 (MQ=255)                                              tccaactggctgaggtcggcgcggatgtggcagggcgcttgcggtaactgcagctcgacccggatgcgcgcgccagtgacggtgtcgagcatgtcggccatGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAgg                                                                                                         <  2:316593‑M1/44‑1 (MQ=255)                                              tccaactggctgaggtcggcgcggatgtggcagggcgcttgcggtaactgcagctcgacccggatgcgcgcgccagtgacggtgtcgagcatgtcggccatGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAgg                                                                                                         >  1:316593‑M1/102‑145 (MQ=255)                                                catctggctgaggtcggcgcggatgtggcagggcgcttgcggtaactgcagctcgacccggatgcgcgcgccagtgacggtgtcgagcatgtcggccatGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATgg                                                                                                   >  3:57091‑M1/100‑149 (MQ=255)                                                  ccGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGcc                                                                                                 <  1:139851/149‑1 (MQ=255)                                                    gaggagCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGa                                                                                               <  8:260808/149‑1 (MQ=255)                                                     aggagCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGAc                                                                                              <  7:123896/149‑1 (MQ=255)                                                            ccgcGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTc                                                                                        >  6:198779/1‑148 (MQ=255)                                                               cgAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAgg                                                                                                         >  6:41900/1‑128 (MQ=255)                                                               cgAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAgg                                                                                                         <  5:41900/128‑1 (MQ=255)                                                                              gACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGgcgcgc                                                                     <  2:215989/149‑1 (MQ=255)                                                                                          cacGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTc                                                          <  6:206419/148‑1 (MQ=255)                                                                                          atctgTCGCCCGGGGTGCCAAACTGACCGGTCAGCTCCTGGCCTGCGCCCGCCGCCCGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGCGGCCATGGCCGACATGCGCGACACCGTCACTGGCGCGCGCATCCGGGTCg                                                         <  8:235232/145‑1 (MQ=255)                                                                                           acGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATg                                                                                                    >  7:104228/1‑105 (MQ=255)                                                                                           acGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATg                                                                                                    <  8:104228/105‑1 (MQ=255)                                                                                               tCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCGCAGCCCCCAGGGGTTCGAGGCCGGGCCTCGGCTGGAGGCCCGGGCCGACATGCTCGCCCCCGTCCCTGGCGCGCGCATCCGGGGCg                                                         >  7:235232/1‑144 (MQ=255)                                                                                               tCGACCGGGGTGCCAAACTGACCGGTCAGCTACTGGCCGTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTg                                                    <  2:359178/149‑1 (MQ=255)                                                                                                 gACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCa                                                  <  6:292993/149‑1 (MQ=255)                                                                                                  aCCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAg                                                 <  5:198779/149‑1 (MQ=255)                                                                                                   ccGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGgcgcg                                                                      <  5:251202/127‑1 (MQ=255)                                                                                                   ccGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGgcgcg                                                                      >  6:251202/1‑127 (MQ=255)                                                                                                      tggtgCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTAc                                             <  3:70941/149‑1 (MQ=255)                                                                                                        gtgCAAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCg                                           <  6:28867/149‑1 (MQ=255)                                                                                                          gCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGc                                          >  5:52016/1‑148 (MQ=255)                                                                                                                    ccGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGc                               <  4:35237/149‑1 (MQ=255)                                                                                                                       gTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGTCCGGGCCTCGGCTGAAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAgcgttgcggg                              >  5:251884/1‑140 (MQ=255)                                                                                                                                tGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGcc                   >  5:320305/1‑149 (MQ=255)                                                                                                                                  gCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGa                 >  7:79810/1‑149 (MQ=255)                                                                                                                                  gCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGa                 >  6:199500/1‑149 (MQ=255)                                                                                                                                  gCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGa                 >  6:61625/1‑149 (MQ=255)                                                                                                                                     ttCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGCTACCGCAAGCGCCCTGCCACATCCGCGCCGACCt              >  4:152599/1‑149 (MQ=255)                                                                                                                                        gCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGCTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCa            <  3:152599/148‑1 (MQ=255)                                                                                                                                         cccGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGc          >  5:286418/1‑149 (MQ=255)                                                                                                                                         cccGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGc          >  4:185606/1‑149 (MQ=255)                                                                                                                                         cccGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGc          >  2:286766/1‑149 (MQ=255)                                                                                                                                         cccGACGCCAGGCCCTCAGCCAACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCTCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGc          >  4:196930/1‑149 (MQ=255)                                                                                                                                             aCGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCaat      <  6:52016/149‑3 (MQ=255)                                                                                                                                             aCGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGt      >  7:131560/1‑149 (MQ=255)                                                                                                                                              cGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGtt     <  8:79810/149‑1 (MQ=255)                                                                                                                                              cGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGtt     <  5:199500/149‑1 (MQ=255)                                                                                                                                                  aGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGa  >  1:153554/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CTGACCATCATCCGCTCGTCGCTGCACTTCCTGCAGCGCCCCAACCTGGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGA  >  NC_002947/4147046‑4147338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.