New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4147192 =	48 (0.850)	3 (0.050)	3/252	NT	6.3%	coding (1275/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4147238 =	42 (0.760)					coding (1321/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator

GGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGATAATCAACCTGATGCTCAACGGCCGCGATGCCATGGCTGG  >  NC_002947/4147093‑4147386                                                                                                                                                  |                                                                                                                                                     catctggctgaggtcggcgcggatgtggcagggcgcttgcggtaactgcagctcgacccggatgcgcgcgccagtgacggtgtcgagcatgtcggccatGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATgg                                                                                                                                                   >  3:57091‑M1/100‑149 (MQ=255)   ccGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGcc                                                                                                                                                 <  1:139851/149‑1 (MQ=255)     gaggagCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGa                                                                                                                                               <  8:260808/149‑1 (MQ=255)      aggagCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGAc                                                                                                                                              <  7:123896/149‑1 (MQ=255)             ccgcGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTc                                                                                                                                        >  6:198779/1‑148 (MQ=255)                               gACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGgcgcgc                                                                                                                     <  2:215989/149‑1 (MQ=255)                                           cacGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTc                                                                                                          <  6:206419/148‑1 (MQ=255)                                           atctgTCGCCCGGGGTGCCAAACTGACCGGTCAGCTCCTGGCCTGCGCCCGCCGCCCGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGCGGCCATGGCCGACATGCGCGACACCGTCACTGGCGCGCGCATCCGGGTCg                                                                                                         <  8:235232/145‑1 (MQ=255)                                            acGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATg                                                                                                                                                    <  8:104228/105‑1 (MQ=255)                                            acGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATg                                                                                                                                                    >  7:104228/1‑105 (MQ=255)                                                tCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCGCAGCCCCCAGGGGTTCGAGGCCGGGCCTCGGCTGGAGGCCCGGGCCGACATGCTCGCCCCCGTCCCTGGCGCGCGCATCCGGGGCg                                                                                                         >  7:235232/1‑144 (MQ=255)                                                tCGACCGGGGTGCCAAACTGACCGGTCAGCTACTGGCCGTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTg                                                                                                    <  2:359178/149‑1 (MQ=255)                                                  gACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCa                                                                                                  <  6:292993/149‑1 (MQ=255)                                                   aCCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAg                                                                                                 <  5:198779/149‑1 (MQ=255)                                                    ccGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGgcgcg                                                                                                                      <  5:251202/127‑1 (MQ=255)                                                    ccGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGgcgcg                                                                                                                      >  6:251202/1‑127 (MQ=255)                                                       tggtgCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTAc                                                                                             <  3:70941/149‑1 (MQ=255)                                                         gtgCAAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCg                                                                                           <  6:28867/149‑1 (MQ=255)                                                           gCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGc                                                                                          >  5:52016/1‑148 (MQ=255)                                                                     ccGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGc                                                                               <  4:35237/149‑1 (MQ=255)                                                                        gTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGTCCGGGCCTCGGCTGAAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAgcgttgcggg                                                                              >  5:251884/1‑140 (MQ=255)                                                                                 tGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGcc                                                                   >  5:320305/1‑149 (MQ=255)                                                                                   gCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGa                                                                 >  6:61625/1‑149 (MQ=255)                                                                                   gCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGa                                                                 >  6:199500/1‑149 (MQ=255)                                                                                   gCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGa                                                                 >  7:79810/1‑149 (MQ=255)                                                                                      ttCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGCTACCGCAAGCGCCCTGCCACATCCGCGCCGACCt                                                              >  4:152599/1‑149 (MQ=255)                                                                                         gCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGCTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCa                                                            <  3:152599/148‑1 (MQ=255)                                                                                          cccGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGc                                                          >  4:185606/1‑149 (MQ=255)                                                                                          cccGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGc                                                          >  5:286418/1‑149 (MQ=255)                                                                                          cccGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGc                                                          >  2:286766/1‑149 (MQ=255)                                                                                          cccGACGCCAGGCCCTCAGCCAACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCTCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGc                                                          >  4:196930/1‑149 (MQ=255)                                                                                              aCGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCaat                                                      <  6:52016/149‑3 (MQ=255)                                                                                              aCGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGt                                                      >  7:131560/1‑149 (MQ=255)                                                                                               cGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGtt                                                     <  8:79810/149‑1 (MQ=255)                                                                                               cGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGtt                                                     <  5:199500/149‑1 (MQ=255)                                                                                                ccatggcctccagccgaggcccggcctcgaacacctgtgggctgagggccATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGATg                                                    >  3:57091‑M2/51‑149 (MQ=255)                                                                                                   aGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGa                                                  >  1:153554/1‑148 (MQ=255)                                                                                                      cctccagccgaggcccggcctcgaacacctgtgggctgagggccATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGa                                                  >  1:316593‑M2/45‑145 (MQ=255)                                                                                                      cctccagccgaggcccggcctcgaacacctgtgggctgagggccATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGa                                                  <  2:316593‑M2/101‑1 (MQ=255)                                                                                                       CCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTc                                                             >  5:275427‑M1/1‑133 (MQ=255)                                                                                                       CCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTc                                                             <  6:275427‑M1/133‑1 (MQ=255)                                                                                                           aGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGa                                          <  5:247414/148‑1 (MQ=255)                                                                                                              ccACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGGCATGCTCGac                                                                                                                                     >  7:123658/1‑54 (MQ=255)                                                                                                              ccACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGGCATGCTCGac                                                                                                                                     <  8:123658/54‑1 (MQ=255)                                                                                                                  aGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGATAATCAAc                                  <  5:61625/149‑1 (MQ=255)                                                                                                                    gtgtTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGATAATCAACCt                                <  2:153554/149‑1 (MQ=255)                                                                                                                        tCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGATAATCAACCTGATg                            >  7:14331/1‑149 (MQ=255)                                                                                                                          gAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGATAATCAACCTGATGc                           <  8:14331/148‑1 (MQ=255)                                                                                                                           aGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCTCATCCgg                                                                                                             <  2:165307/65‑1 (MQ=255)                                                                                                                                    cTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGATAATCAACCTGATGCTCAACGGCcgc                >  1:2392/1‑149 (MQ=255)                                                                                                                                            gAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGATAATCAACCTGATGCTCAACGGCCGCGATGCCAt        >  7:183764/1‑149 (MQ=255)                                                                                                                                                  aTGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGATAATCAACCTGATGCTCAACGGCCGCGATGCCAtggctgg  <  6:320305/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGCCGAGGAGCGCCGCGAGCGCTACCTCAAGACCATGTCCGACACGGTCGACCGTGGTGCCAAACTGACCGGTCAGCTACTGGCCTTCGCCCGACGCCAGGCCCTCAGCCCACAGGTGTTCGAGGCCGGGCCTCGGCTGGAGGCCATGGCCGACATGCTCGACACCGTCACTGGCGCGCGCATCCGGGTCGAGCTGCAGTTACCGCAAGCGCCCTGCCACATCCGCGCCGACCTCAGCCAGTTGGAAACCGCGATAATCAACCTGATGCTCAACGGCCGCGATGCCATGGCTGG  >  NC_002947/4147093‑4147386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.