New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4233848	57 (1.010)	4 (0.070)	4/248	NT	6.9%	coding (1217/1512 nt)	PP_3711	diguanylate cyclase
	?	NC_002947	= 4233885	53 (0.980)					coding (1180/1512 nt)	PP_3711	diguanylate cyclase

TGCGCAGGTCGGTTTCCACCAGGCGGCGCTGGCGGGCGGCAACGTCCAGTTCGACATCGAAGCATTCATAACGATTACGGCCGTTACGCTTGGCCTGGTACAGCGCCATGTCAGCGTAGCCCAGCAGTTGCTCTGCCTGGTCATGGTCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4233696‑4233848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcagTTCGCGGTGGGGGTGAGCATCGGCATCGCCATCGCGCCTGATGACCATGACCAGGCAGAGCAACTGCTGGGCTACGCTGACATGGCGCTGTACCAGGCCAAGCGTAACGGCCGTAATCGTTATGAATGCTTCGATGTCGAACTGG  <  NC_002947/4233885‑4233741                                                                                                                                                                                                                                                                                                            TGCGCAGGTCGGTTTCCACCAGGCGGCGCTGGCGGGCGGCAACGTCCAGTTCGACATCGAAGCATTCATAACGATTACGGCCGTTACGCTTGGCCTGGTACAGCGCCATGTCAGCGTAGCCCAGCAGTTGCTCTGCCTGGTCATGGTCA                                                                                                                                                       <  1:212615/149‑1                  ACCAGGCGGCGCTGGCGGGCGGCAACGTCCAGTTCGACATCGAAGCATTCATAACGATTACGGCCGTTACGCTTGGCCTGGTACAGCGCCATGTCAGCGTAGCCCAGCAGTTGCTCTGCCTGGTCATGGTCATCAGTTCGCGGTGGGGG                                                                                                                                      >  2:333992/1‑149                                                  TTCGACATCGAAGCATTCATAACGATTACGGCCGTTACGCTTGGCCTGGTACAGCGCCATGTCAGCGTAGCCCAGCAGTTGCTCTGCCTGGTCATGGTCATCAGTTCGCGGTGGGGGTGAGCATCGGCATCGCCATCGCGCCTGATGAC                                                                                                      <  1:333992/149‑1                                                           GAAGCATTCATAACGATTACGGCCGTTACGCTTGGCCTGGTACAGCGCCATGTCAGCGTAGCCCAGCAGTTGCTCTGCCTGGTCATGGTCATCAGTTCGCGGTGGGGGTGAGCATCGGCATCGCCATCGCGCCTGATGACC                                                                                                     >  7:336433/1‑141                                                           GAAGCATTCATAACGATTACGGCCGTTACGCTTGGCCTGGTACAGCGCCATGTCAGCGTAGCCCAGCAGTTGCTCTGCCTGGTCATGGTCATCAGTTCGCGGTGGGGGTGAGCATCGGCATCGCCATCGCGCCTGATGACC                                                                                                     <  8:336433/141‑1                                                                                                                                                    CATCAGTTCGCGGTGGGGGTGAGCATCGGCATCGCCATCGCGCCTGATGACCATGACCAGGCAGAGCAACTGCTGGGCTACGCTGACATGGCGCTGTACCAGGCCAAGCGTAACGGCCGTATTCGTTATGAATGCTTCGATGTCGAACT    <  8:327543/149‑1                                                                                                                                                     ATCAGTTCGCGGTGGGGGTGAGCATCGGCATCGCCATCGCGCCTGATGACCATGACCAGGCAGAGCAACTGCTGGGCTACGCTGACATGGCGCTGTACCAGGCCAAGCGTAACGGCCGTAATCGTTATGAATGCTTCGATGTCGAACTG   >  1:32479/1‑149                                                                                                                                                      TCAGTTCGCGGTGGGGGTGAGCATCGGCATCGCCATCGCGCCTGATGACCATGACCAGGCAGAGCAACTGCTGGGCTACGCTGACATGGCGCTGTACCAGGCCTAGCGTAACGGCCGTAATCGTTATGAATGCTTCGATGTCGAACTGG  <  1:253424/149‑1                                                                                                                                                      TCAGTTCGCGGTGGGGGTGAGCATCGGCATCGCCATCGCGCCTGATGACCATGACCAGGCAGAGCAACTGCTGGGCTACGCTGACATGGCGCTGTACCAGGCCAAGCGTAACGGCCGTAATCGTTATGAATGCTTCGATGTCGAACTG   >  5:366191/1‑148                                                                                                                                                                                                                                                                                                            TGCGCAGGTCGGTTTCCACCAGGCGGCGCTGGCGGGCGGCAACGTCCAGTTCGACATCGAAGCATTCATAACGATTACGGCCGTTACGCTTGGCCTGGTACAGCGCCATGTCAGCGTAGCCCAGCAGTTGCTCTGCCTGGTCATGGTCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4233696‑4233848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcagTTCGCGGTGGGGGTGAGCATCGGCATCGCCATCGCGCCTGATGACCATGACCAGGCAGAGCAACTGCTGGGCTACGCTGACATGGCGCTGTACCAGGCCAAGCGTAACGGCCGTAATCGTTATGAATGCTTCGATGTCGAACTGG  <  NC_002947/4233885‑4233741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.