New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4317803	35 (0.620)	5 (0.090)	4/250	NT	12.9%	coding (64/1221 nt)	PP_3789	efflux transporter
	?	NC_002947	= 4317836	34 (0.620)					coding (97/1221 nt)	PP_3789	efflux transporter

TTGCCAATCTTCACGCACTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4317652‑4317803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggCTATTCCCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGG  <  NC_002947/4317836‑4317690                                                                                                                                                                                                                                                                                                             TTGCCAATCTTCACGCACTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGC                                                                                                                                                        >  1:308275/1‑149    CCAATCTTCACGCACTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTG                                                                                                                                                      <  5:80386/148‑1                                GCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGG‑‑GTTCCCTTGCTTGCATCGTGCAGCAGG                                                                                                                        <  4:269020/148‑1                                   CCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGCTATTCCCTTGCTTGCATCGTGCAGCAGGG                                                                                                                       >  4:311818/1‑148                                             TGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGCTATTCCCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAG                                                                                                             <  2:308275/148‑1                                               CGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGCTATTCCCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGA                                                                                                           <  3:311818/148‑1                                               CGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGCTATTCCCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGA                                                                                                           <  7:10850/148‑1                                                                              ACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCT                                                                                                                                                       <  7:90011/73‑1                                                                              ACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCT                                                                                                                                                       >  8:90011/1‑73                                                                                                                                                       GGCTATTCCCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGG  >  5:119159/1‑149                                                                                                                                                                                                                                                                                                             TTGCCAATCTTCACGCACTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTTGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4317652‑4317803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggCTATTCCCTTGCTTGCATCGTGCAGCAGGGAACCCAGCAGGAGCGAGTGCAAGGGCGAGTGTGGCCGTGACCACGAAAGAATGGACATGGGCTGCATCAAGCTCCTGTGGACGTTGGCCTCGCCTGCCGGCGATCGGCGCACAGTGG  <  NC_002947/4317836‑4317690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.