New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4317803	35 (0.620)	5 (0.090)	4/250	NT	12.9%	coding (64/1221 nt)	PP_3789	efflux transporter
	?	NC_002947	= 4317836	34 (0.620)					coding (97/1221 nt)	PP_3789	efflux transporter

CCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAGGGCTGCTATTCGACCGTTTCGCGCGATTGC  >  NC_002947/4317690‑4317980                                                                                                                                                    |                                                                                                                                                  ccACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGcc                                                                                                                                                 >  5:119159‑M2/1‑147 (MQ=255)            cGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGAt                                                                                                                                      <  3:64665/149‑1 (MQ=255)               tCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGt                                                                                                                                   >  5:279795/1‑149 (MQ=255)                       gagCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGAACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTctg                                                                                                                            <  7:182654/146‑1 (MQ=255)                         gCGAGGCCAACGTCCACAGGAGCTTGGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTctgct                                                                                                                          >  1:187788/1‑149 (MQ=255)                         gCGAGGACAACGTACACAGGAGCTA‑GATGCAGCCCAAGTCCAATCATTCGTGGACACGGCCACACTCGCCATTGCACACGCTCCTGCTGGGTACACTGCTCCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGCTTCTTctact                                                                                                                          >  4:43217/1‑148 (MQ=255)                           gAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGac                                                                                                                       <  7:189344/149‑1 (MQ=255)                                cAACGTCCACAGGAGCTT‑GATGCATCCCATGTCCAGTCTTTCGTGGGCACGTCCACACTCGCCCTTTAACTCGCTCCTGCTGGGTTCCCTGATGCACGATGCAAGCAAGGGAATAGCCAGCAAGCTGAt                                                                                                                                      >  6:259738/1‑129 (MQ=255)                                cAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGTCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGa                                                                                                                        <  4:204693/143‑1 (MQ=255)                                cAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGa                                                                                                                        >  3:204693/1‑143 (MQ=255)                                cAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCAccc                                                                                                                  >  3:352257/1‑149 (MQ=255)                                        acaGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGc                                                                                                          <  4:352257/149‑1 (MQ=255)                                        acaGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGc                                                                                                          <  4:252614/149‑1 (MQ=255)                                         caGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGcc                                                                                                         <  2:187788/149‑1 (MQ=255)                                             aGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGaa                                                                                                     <  6:279795/149‑1 (MQ=255)                                                     tGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGtt                                                                                                                                  <  1:101390/113‑1 (MQ=255)                                                     tGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGtt                                                                                                                                  >  2:101390/1‑113 (MQ=255)                                                       cAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑a                                                                                           <  6:291249/149‑1 (MQ=255)                                                         gCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑Agc                                                                                         >  8:332294/1‑148 (MQ=255)                                                              tGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTTCTGGGTTCCCTGCTTCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAggg                                                                                    <  3:43217/149‑1 (MQ=255)                                                                       tttCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGctgctg                                                                           >  5:2654/1‑149 (MQ=255)                                                                                             gCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCaa                                                     >  4:316126/1‑149 (MQ=255)                                                                                                     aCTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATg                                             >  4:114250/1‑149 (MQ=255)                                                                                                       tCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGt                                            >  5:29986/1‑148 (MQ=255)                                                                                                           tCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGccagcaggagcgagtgcaagggcgagtgtggccgtgaccacgaaagaatggacatgggctgcatcaagctcctgtggacgttggcctcgcctgccggcgatcggcg                                         <  3:311818‑M2/148‑107 (MQ=255)                                                                                                           tCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGccagcaggagcgagtgcaagggcgagtgtggccgtgaccacgaaagaatggacatgggctgcatcaagctcctgtggacgttggcctcgcctgccggcgatcggcg                                         <  7:10850‑M2/148‑107 (MQ=255)                                                                                                           tCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTg                                       >  7:155301/1‑149 (MQ=255)                                                                                                             ctgctgGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGccagcaggagcgagtgcaagggcgagtgtggccgtgaccacgaaagaatggacatgggctgcatcaagctcctgtggacgttggcctcgcctgccggcgatcggcgca                                       <  2:308275‑M2/148‑109 (MQ=255)                                                                                                                   ggTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAgg                               >  7:41774/1‑149 (MQ=255)                                                                                                                       cccTGCTGCACGATGCAAGCAAGGGAATAGccagcaggagcgagtgcaagggcgagtgtggccgtgaccacgaaagaatggacatgggctgcatcaagctcctgtggacgttggcctcgcctgccggcgatcggcgcacagtggctgg                             >  4:311818‑M2/1‑30 (MQ=255)                                                                                                                       cccTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAGGgct                            <  2:334141/148‑1 (MQ=255)                                                                                                                        ccTGCTGCTCGATGCAAGCAAGCGAATAGCCAGCCCGCTGATGGTTCTTGAGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATTCTGCTGGCAACTCTGATGTCATTGCCGGCAGGgctgc                          <  7:102798/149‑1 (MQ=255)                                                                                                                        ccTGCTGCACGATGCAAGCAAGGGAAC‑cagcaggagcgagtgcaagggcgagtgtggccgtgaccacgaaagaatggacatgggctgcatcaagctcctgtggacgttggcctcgcctgccggcgatcggcgcacagtggctggagc                            <  4:269020‑M2/148‑121 (MQ=255)                                                                                                                                        agcaagGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAAGACAGGGGCGCTGCTGGGCATTTCAATgctgct                                                          <  1:230838/102‑1 (MQ=255)                                                                                                                                        agcaagGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATgctgct                                                          >  2:230838/1‑101 (MQ=255)                                                                                                                                        agcaagGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAGGGCTGCTATTCGACCGTTTcgc          >  1:238195/1‑149 (MQ=255)                                                                                                                                         gcaagGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAGGGCTGCTATTCGACCGTTTcgcg         >  5:356280/1‑149 (MQ=255)                                                                                                                                           aagGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTTACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCAtt                                        <  2:182700/116‑1 (MQ=255)                                                                                                                                           aagGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCAtt                                        >  1:182700/1‑116 (MQ=255)                                                                                                                                            agGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAGGGCTGCTATTCGAc                  <  8:55052/137‑1 (MQ=255)                                                                                                                                                aaTAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAGGGCTGCTATTCGACCGTTTCGCGCGATTGc  <  7:332294/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGC‑AGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAGGGCTGCTATTCGACCGTTTCGCGCGATTGC  >  NC_002947/4317690‑4317980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.