New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4317803	35 (0.620)	5 (0.090)	4/250	NT	12.9%	coding (64/1221 nt)	PP_3789	efflux transporter
	?	NC_002947	= 4317836	34 (0.620)					coding (97/1221 nt)	PP_3789	efflux transporter

CAATCTTCACGCACTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAGG  >  NC_002947/4317656‑4317951                                                                                                                                                     |                                                                                                                                                     cAATCTTCACGCACTCACACTGGCCTCGCCCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTggg                                                                                                                                                     <  4:58988/149‑1 (MQ=255)        cACGCACTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTcc                                                                                                                                                 <  5:15377/146‑1 (MQ=255)            cACTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCtgctgc                                                                                                                                          <  7:251723/149‑1 (MQ=255)              cTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTcc                                                                                                                                                 >  2:74062/1‑140 (MQ=255)              cTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTcc                                                                                                                                                 >  2:68950/1‑140 (MQ=255)              cTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTcc                                                                                                                                                 <  1:74062/140‑1 (MQ=255)              cTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTcc                                                                                                                                                 <  1:68950/140‑1 (MQ=255)                 acacTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGAt                                                                                                                                     >  2:240561/1‑149 (MQ=255)                 acacTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGAt                                                                                                                                     >  1:334141/1‑149 (MQ=255)                  cacTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATg                                                                                                                                    <  1:240561/149‑1 (MQ=255)                       gCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCATGATgcaagc                                                                                                                               <  3:29308/149‑1 (MQ=255)                          tCGCTCCAGCCACTGAGCGCCGATCGCCGGCAGGCGAGGCCAACGTACACAGGAGCTA‑GATGCAGCCAATGTCCATTCTTTCGTGGTAACTGCCACAATCGCCCTTGCCCTCGATCCTGCTGGGTTACCTGCTGCACGATGcaagcaag                                                                                                                            >  8:102798/1‑149 (MQ=255)                           cGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAgg                                                                                                                           >  8:189344/1‑149 (MQ=255)                            gCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGgttcccttgcttgcatcgtgcagcagg                                                                                                                           <  4:269020‑M1/148‑28 (MQ=255)                            gCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAggg                                                                                                                          <  2:159774/149‑1 (MQ=255)                               ccAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGctattcccttgcttgcatcgtgcagcaggg                                                                                                                        >  4:311818‑M1/1‑118 (MQ=255)                                cAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGaa                                                                                                                        >  6:119159/1‑147 (MQ=255)                                 aGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGa                                                                                                                                      >  5:82897/1‑132 (MQ=255)                                 aGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGa                                                                                                                                      <  6:82897/132‑1 (MQ=255)                                   ccACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGcc                                                                                                                   >  5:119159‑M2/1‑147 (MQ=255)                                         tgCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGctattcccttgcttgcatcgtgcagcagggaacccagcag                                                                                                              <  2:308275‑M1/148‑41 (MQ=255)                                           cgcCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGctattcccttgcttgcatcgtgcagcagggaacccagcagga                                                                                                            <  3:311818‑M1/148‑43 (MQ=255)                                           cgcCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGctattcccttgcttgcatcgtgcagcagggaacccagcagga                                                                                                            <  7:10850‑M1/148‑43 (MQ=255)                                              cGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGAt                                                                                                        <  3:64665/149‑1 (MQ=255)                                                 tCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGt                                                                                                     >  5:279795/1‑149 (MQ=255)                                                         gagCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGAACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTctg                                                                                              <  7:182654/146‑1 (MQ=255)                                                           gCGAGGCCAACGTCCACAGGAGCTTGGATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTctgct                                                                                            >  1:187788/1‑149 (MQ=255)                                                           gCGAGGACAACGTACACAGGAGCTA‑GATGCAGCCCAAGTCCAATCATTCGTGGACACGGCCACACTCGCCATTGCACACGCTCCTGCTGGGTACACTGCTCCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGCTTCTTctact                                                                                            >  4:43217/1‑148 (MQ=255)                                                             gAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGac                                                                                         <  7:189344/149‑1 (MQ=255)                                                                  cAACGTCCACAGGAGCTT‑GATGCATCCCATGTCCAGTCTTTCGTGGGCACGTCCACACTCGCCCTTTAACTCGCTCCTGCTGGGTTCCCTGATGCACGATGCAAGCAAGGGAATAGCCAGCAAGCTGAt                                                                                                        >  6:259738/1‑129 (MQ=255)                                                                  cAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGTCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGa                                                                                          <  4:204693/143‑1 (MQ=255)                                                                  cAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGa                                                                                          >  3:204693/1‑143 (MQ=255)                                                                  cAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCAccc                                                                                    >  3:352257/1‑149 (MQ=255)                                                                          acaGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGc                                                                            <  4:352257/149‑1 (MQ=255)                                                                          acaGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGc                                                                            <  4:252614/149‑1 (MQ=255)                                                                           caGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGcc                                                                           <  2:187788/149‑1 (MQ=255)                                                                               aGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGaa                                                                       <  6:279795/149‑1 (MQ=255)                                                                                       tGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGtt                                                                                                    <  1:101390/113‑1 (MQ=255)                                                                                       tGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGtt                                                                                                    >  2:101390/1‑113 (MQ=255)                                                                                         cAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCa                                                              <  6:291249/149‑1 (MQ=255)                                                                                           gCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAgc                                                            >  8:332294/1‑148 (MQ=255)                                                                                                tGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTTCTGGGTTCCCTGCTTCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAGACAggg                                                       <  3:43217/149‑1 (MQ=255)                                                                                                         tttCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAGACAGGGGCGctgctg                                              >  5:2654/1‑149 (MQ=255)                                                                                                                               gCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCaa                        >  4:316126/1‑149 (MQ=255)                                                                                                                                       aCTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATg                >  4:114250/1‑149 (MQ=255)                                                                                                                                         tCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGt               >  5:29986/1‑148 (MQ=255)                                                                                                                                             tCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGccagcaggagcgagtgcaagggcgagtgtggccgtgaccacgaaagaatggacatgggctgcatcaagctcctgtggacgttggcctcgcctgccggcgatcggcg           <  7:10850‑M2/148‑107 (MQ=255)                                                                                                                                             tCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGccagcaggagcgagtgcaagggcgagtgtggccgtgaccacgaaagaatggacatgggctgcatcaagctcctgtggacgttggcctcgcctgccggcgatcggcg           <  3:311818‑M2/148‑107 (MQ=255)                                                                                                                                             tCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTg          >  7:155301/1‑149 (MQ=255)                                                                                                                                               ctgctgGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGccagcaggagcgagtgcaagggcgagtgtggccgtgaccacgaaagaatggacatgggctgcatcaagctcctgtggacgttggcctcgcctgccggcgatcggcgca         <  2:308275‑M2/148‑109 (MQ=255)                                                                                                                                                    ggctattcccttgcttgcatcgtgcagcagggaacccagcaggagcgagtgcaagggcgagtgtggccgtgaccacgaaagaatggacatgggctgcatcaagctcctgtggacgttggcctcgcctgccggcgatcggcgcacagtgg   >  5:119159‑M1/1‑2 (MQ=255)                                                                                                                                                     ggTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAgg  >  7:41774/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAATCTTCACGCACTCACACTGGCCTCGCTCCAGCCACTGTGCGCCGATCGCCGGCAGGCGAGGCCAACGTCCACAGGAGCTT‑GATGCAGCCCATGTCCATTCTTTCGTGGTCACGGCCACACTCGCCCTTGCACTCGCTCCTGCTGGGTTCCCTGCTGCACGATGCAAGCAAGGGAATAGCCAGCCCGCTGATGGTTCTTCTGCTGACCACCCGCTTTGGCCTGAACAGCTGGCAGACAGGGGCGCTGCTGGGCATTTCAATGCTGCTGGCAACGCTGATGTCATTGCCGGCAGG  >  NC_002947/4317656‑4317951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.