| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4399806 = | 54 (0.950) | 3 (0.050) | 3/252 | NT | 6.3% | coding (84/972 nt) | PP_3878 | minor capsid protein C |
| ? | NC_002947 | 4399876 = | 37 (0.670) | coding (14/972 nt) | PP_3878 | minor capsid protein C | |||||
ATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCCAGCTTGCTGTTCAACCAGCCGCTACTGACTACACCCGACATGCTGGACCTGGCAGTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4399957‑4399806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATG > NC_002947/4399876‑4399958 ATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCCAGCTTGCTGTTCAACCAGCCGCTACTGACTACACCCGACATGCTGGACCTGGCAGTG > 2:100743/1‑149ATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCCAGCTTGCTGTTCAACCAGCCGCTACTGACTACACCCGACATGCTGGACCTGGCAGTG > 7:315783/1‑149 GCGCTGCCAGCTTGCTGTTCAACCAGCCGCTACTGACTACACCCGACATGCTGGACCTGGCAGTGCGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCA < 3:42597/149‑1 GCGCTGCCAGCTTGCTGTTCAACCAGCCGCTACTGACTACACCCGACATGCTGGACCTGGCAGTGCGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCA > 4:42597/1‑149 GCTGCCAGCTTGCTGTTCAACCAGCCGCTACTGACTACACCCGACATGCTGGACCTGGCAGTGCGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATG > 6:24988/1‑149 ATGACTAACCCCAACGTCCGCGCCCAGCTGGAACAGCAGCGCGACGACATCCTGAGGATGCTTGCCGCATGAAACGACATTTGCGCGCTGCCAGCTTGCTGTTCAACCAGCCGCTACTGACTACACCCGACATGCTGGACCTGGCAGTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4399957‑4399806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATG > NC_002947/4399876‑4399958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |