New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4399806 =	54 (0.950)	3 (0.050)	3/252	NT	6.3%	coding (84/972 nt)	PP_3878	minor capsid protein C
	?	NC_002947	4399876 =	37 (0.670)					coding (14/972 nt)	PP_3878	minor capsid protein C

AACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGTTGG  >  NC_002947/4399732‑4400019                                                                                                                                                  |                                                                                                                                                  aaCATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCTTGGTCTGGTTCGCCCAGCGCACTGCCAGGTCTAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAAt                                                                                                                                                <  1:102426/148‑1 (MQ=255) aaCATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCTTGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAAt                                                                                                                                                >  2:102426/1‑148 (MQ=255)     tCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATTGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGt                                                                                                                                           <  2:325075/149‑1 (MQ=255)        aTGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGATCAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTc                                                                                                                                        <  4:343078/149‑1 (MQ=255)           gATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCAt                                                                                                                                      <  6:118724/148‑1 (MQ=255)                          cgccCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCt                                                                                                                        >  3:178509/1‑147 (MQ=255)                             ccATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑a                                                                                                                 <  7:205123/149‑1 (MQ=255)                             ccATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑a                                                                                                                 >  4:117048/1‑149 (MQ=255)                              cATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑At                                                                                                                >  8:47074/1‑149 (MQ=255)                                 gTTCAGATTGACGATGTTCAGGCTCATGGTCT‑GTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATgtcg                                                                                                            >  2:276166/1‑149 (MQ=255)                                           aCGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCa                                                                                                                      <  1:37222/132‑1 (MQ=255)                                           aCGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCa                                                                                                                      >  2:37222/1‑132 (MQ=255)                                                 ttCAGGCTCATGGTCT‑GTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCGCCGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTc                                                                                              <  1:276166/148‑1 (MQ=255)                                                      gCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTg                                                                                        >  4:309112/1‑149 (MQ=255)                                                       cTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTgg                                                                                       <  7:81606/149‑1 (MQ=255)                                                         cATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCTGCAAGCa                                                                                                                            <  7:88013/112‑1 (MQ=255)                                                         cATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCa                                                                                                                            >  8:88013/1‑112 (MQ=255)                                                              tCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGa                                                                                >  8:315783/1‑149 (MQ=255)                                                                     cGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTgg                                                                          <  7:47074/148‑1 (MQ=255)                                                                      gCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTgggg                                                                        <  3:309112/149‑1 (MQ=255)                                                                       cccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTggg                                                                         <  5:321147/147‑1 (MQ=255)                                                                       cccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTggg                                                                         >  6:321147/1‑147 (MQ=255)                                                                       cccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGt                                                                       >  1:100743/1‑149 (MQ=255)                                                                        ccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTggg                                                                                      >  8:188023/1‑133 (MQ=255)                                                                        ccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTggg                                                                                      <  7:188023/133‑1 (MQ=255)                                                                        ccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGtt                                                                      >  1:61350/1‑149 (MQ=255)                                                                              gcgctgccagcttgctgttcaaccagccgctactgactacacccgacatgctggacctggcagtgcgcAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCa                                                                 <  3:42597‑M2/81‑1 (MQ=255)                                                                              gcgctgccagcttgctgttcaaccagccgctactgactacacccgacatgctggacctggcagtgcgcAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCa                                                                 >  4:42597‑M2/69‑149 (MQ=255)                                                                              CACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCAt                                                                >  7:315783‑M1/1‑149 (MQ=255)                                                                              CACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCAt                                                                >  2:100743‑M1/1‑149 (MQ=255)                                                                                gctgccagcttgctgttcaaccagccgctactgactacacccgacatgctggacctggcagtgcgcAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATg                                                               >  6:24988‑M2/67‑149 (MQ=255)                                                                                    cAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCggg                                                          >  5:332239/1‑149 (MQ=255)                                                                                          cAGCATGTCGGGTGTAGTCAGTATCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGTAATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAg                                                       <  1:285650/148‑1 (MQ=255)                                                                                          cAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGt                                                     >  6:131835/1‑148 (MQ=255)                                                                                              aTGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTg                                                >  1:197296/1‑149 (MQ=255)                                                                                                 tCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCt                                             <  3:117048/149‑1 (MQ=255)                                                                                                   gggTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTAc                                           >  6:340808/1‑149 (MQ=255)                                                                                                         aGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGt                                     >  3:354470/1‑149 (MQ=255)                                                                                                                        gTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCAtt                                                 >  6:351958/1‑122 (MQ=255)                                                                                                                        gTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCt                       <  6:332239/148‑1 (MQ=255)                                                                                                                           gAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTg                      >  7:159885/1‑146 (MQ=255)                                                                                                                              cAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACATCGGTCATGTTGAGCGGCTGCAGAt                 >  4:179222/1‑148 (MQ=255)                                                                                                                               aGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATa                >  2:207482/1‑148 (MQ=255)                                                                                                                               aGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATa                >  8:75158/1‑148 (MQ=255)                                                                                                                                          aGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGtt    >  6:294188/1‑149 (MQ=255)                                                                                                                                            cg‑cgcAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGTTgg  <  2:197296/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  AACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGG‑‑ATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTTAGTCATGTCGGGCAGGTCATTGGCTACGTCGGTCATGTTGAGCGGCTGCAGATAACTGTCGCCGTTGG  >  NC_002947/4399732‑4400019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.