New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4399806 =	54 (0.950)	3 (0.050)	3/252	NT	6.3%	coding (84/972 nt)	PP_3878	minor capsid protein C
	?	NC_002947	4399876 =	37 (0.670)					coding (14/972 nt)	PP_3878	minor capsid protein C

GTCTGGGCGATGGCGGCGCGGCGCTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTT  >  NC_002947/4399660‑4399951                                                                                                                                                   |                                                                                                                                                   gTCTGGGCGATGGCGGCGCGGCGCTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAgcg                                                                                                                                                  >  1:70190/1‑149 (MQ=255)         gATGGCGGCGCGGCTCTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCa                                                                                                                                          <  4:144835/149‑1 (MQ=255)             gcggcgcggcGCTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTc                                                                                                                                      >  8:81606/1‑149 (MQ=255)              cggcgcggcgCTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTc                                                                                                                                      >  6:318200/1‑148 (MQ=255)                     gcgcTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGt                                                                                                                              >  6:341146/1‑149 (MQ=255)                     gcgcTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGt                                                                                                                              >  7:326059/1‑149 (MQ=255)                        cTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCgg                                                                                                                           >  3:343078/1‑149 (MQ=255)                        cTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCgg                                                                                                                           <  7:101967/149‑1 (MQ=255)                                            gCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGt                                                                                                                    >  4:121478/1‑136 (MQ=255)                                            gCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGt                                                                                                                    <  3:121478/136‑1 (MQ=255)                                                  ccTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAAc                                                                                                 <  2:112017/149‑1 (MQ=255)                                                  ccTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAAc                                                                                                 <  2:70190/149‑1 (MQ=255)                                                      gTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGc                                                                                              <  8:125690/148‑1 (MQ=255)                                                         gTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAg                                                                                           <  8:326059/148‑1 (MQ=255)                                                            ttCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGt                                                                                                                    >  8:129060/1‑120 (MQ=255)                                                            ttCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTgg                                                                                       >  8:205123/1‑149 (MQ=255)                                                            ttCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTgg                                                                                       >  1:325075/1‑149 (MQ=255)                                                              cATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTgg                                                                                       <  3:132954/147‑1 (MQ=255)                                                               aTCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCgg                                                                                                                           <  2:110434/110‑1 (MQ=255)                                                               aTCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCgg                                                                                                                           >  1:110434/1‑110 (MQ=255)                                                               aTCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAg                                                                                    <  5:341146/149‑1 (MQ=255)                                                               aTCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCACGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCa                                                                                     <  5:318200/148‑1 (MQ=255)                                                                catgactaaccccaacgtccgcgcccagctggaacagcagcgcgacgacatcctgaggatgcttgccgcatgaaacgacatttGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAgc                                                                                   >  6:24988‑M1/84‑149 (MQ=255)                                                                  tgactaaccccaacgtccgcgcccagctggaacagcagcgcgacgacatcctgaggatgcttgccgcatgaaacgacatttGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAgcg‑c                                                                                >  4:42597‑M1/82‑149 (MQ=255)                                                                  tgactaaccccaacgtccgcgcccagctggaacagcagcgcgacgacatcctgaggatgcttgccgcatgaaacgacatttGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAgcg‑c                                                                                <  3:42597‑M1/68‑1 (MQ=255)                                                                   tCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAgcc‑cg                                                                               >  3:39415/1‑149 (MQ=255)                                                                     aTAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTATGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAgcg‑cgc                                                                              >  5:118724/1‑148 (MQ=255)                                                                         aaCATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCTTGGTCTGGTTCGCCCAGCGCACTGCCAGGTCTAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAAt                                                                          <  1:102426/148‑1 (MQ=255)                                                                         aaCATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCTTGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAAt                                                                          >  2:102426/1‑148 (MQ=255)                                                                             tCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATTGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGt                                                                     <  2:325075/149‑1 (MQ=255)                                                                              cGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGaa                                                                                                  >  5:365215/1‑120 (MQ=255)                                                                              cGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGaa                                                                                                  <  6:365215/120‑1 (MQ=255)                                                                                aTGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGATCAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTc                                                                  <  4:343078/149‑1 (MQ=255)                                                                                   gATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCAt                                                                <  6:118724/148‑1 (MQ=255)                                                                                          tGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAg                                                                                                                     <  8:86871/89‑1 (MQ=255)                                                                                          tGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAg                                                                                                                     >  7:86871/1‑89 (MQ=255)                                                                                           gCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGaa                                                                                                  >  4:235341/1‑107 (MQ=255)                                                                                           gCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGaa                                                                                                  <  3:235341/107‑1 (MQ=255)                                                                                               cgccgcCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGtt                                                                                                     >  1:290378/1‑100 (MQ=255)                                                                                               cgccgcCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGtt                                                                                                     <  2:290378/100‑1 (MQ=255)                                                                                                  cgccCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCt                                                  >  3:178509/1‑147 (MQ=255)                                                                                                     ccATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTg                                                                                                        <  1:59/91‑1 (MQ=255)                                                                                                     ccATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTg                                                                                                        >  2:59/1‑91 (MQ=255)                                                                                                     ccATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGa                                             <  7:205123/149‑1 (MQ=255)                                                                                                     ccATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGa                                             >  4:117048/1‑149 (MQ=255)                                                                                                      cATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGAt                                            >  8:47074/1‑149 (MQ=255)                                                                                                         gTTCAGATTGACGATGTTCAGGCTCATGGTCT‑GTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATgtcg                                        >  2:276166/1‑149 (MQ=255)                                                                                                                   aCGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCa                                                >  2:37222/1‑132 (MQ=255)                                                                                                                   aCGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCa                                                <  1:37222/132‑1 (MQ=255)                                                                                                                         ttCAGGCTCATGGTCT‑GTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCGCCGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTc                          <  1:276166/148‑1 (MQ=255)                                                                                                                              gCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTg                    >  4:309112/1‑149 (MQ=255)                                                                                                                               cTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTgg                   <  7:81606/149‑1 (MQ=255)                                                                                                                                tCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGt                                                                                                                    <  6:276725/52‑1 (MQ=255)                                                                                                                                tCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGt                                                                                                                    >  5:276725/1‑52 (MQ=255)                                                                                                                                 cATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCTGCAAGCa                                                      <  7:88013/112‑1 (MQ=255)                                                                                                                                 cATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCa                                                      >  8:88013/1‑112 (MQ=255)                                                                                                                                      tCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGa            >  8:315783/1‑149 (MQ=255)                                                                                                                                             cGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTgg      <  7:47074/148‑1 (MQ=255)                                                                                                                                              gCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTgggg    <  3:309112/149‑1 (MQ=255)                                                                                                                                               cccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTggg     >  6:321147/1‑147 (MQ=255)                                                                                                                                               cccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTggg     <  5:321147/147‑1 (MQ=255)                                                                                                                                               cccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGt   >  1:100743/1‑149 (MQ=255)                                                                                                                                                ccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTggg                  <  7:188023/133‑1 (MQ=255)                                                                                                                                                ccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTggg                  >  8:188023/1‑133 (MQ=255)                                                                                                                                                ccAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGtt  >  1:61350/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GTCTGGGCGATGGCGGCGCGGCGCTGTTCTTCGCGGCGATCCTGCTCAGCCTGGTAGTCTTCATCGTCATAGAACATCGATGGATTGGCTGCAGCGCCGCCCATGTTCAGATTGACGATGTTCAGGCTCATGGTCTGGTTCGCCCAGCGCACTGCCAGGTCCAGCATGTCGGGTGTAGTCAGTAGCGGCTGGTTGAACAGCAAGCTGGCAGCG‑CGCAAATGTCGTTTCATGCGGCAAGCATCCTCAGGATGTCGTCGCGCTGCTGTTCCAGCTGGGCGCGGACGTTGGGGTT  >  NC_002947/4399660‑4399951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.