New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5118857	47 (0.830)	3 (0.060)	3/246	NT	5.9%	coding (631/1341 nt)	PP_4505	sensor histidine kinase
	?	NC_002947	= 5118883	52 (0.970)					coding (657/1341 nt)	PP_4505	sensor histidine kinase

GTGCTGACCCTGTTCAGCCTGCTGGTGACGCTGTCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGTTTGGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5118710‑5118857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgcGCCCATCTTGTTGAAGTCCTTGGCCAGCACGCCAAA  <  NC_002947/5118883‑5118848                                                                                                                                                                                          GTGCTGACCCTGTTCAGCCTGCTGGTGACGCTGTCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTCCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGCCGCGACGAGTATCGCGTcct                                     >  5:274505/1‑146                                    CATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGTTTGGCGTGCGCCCATCTTGTTGAAGTCCTTGGCCAGCACGCCAAA  <  3:50104/149‑1                                                                                             CTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGTTTGGCGTGCGCCCATCTTGTTGAAGTCCTTGGCCAGCACGCC     >  1:226647/1‑89                                                                                             CTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGTTTGGCGTGCGCCCATCTTGTTGAAGTCCTTGGCCAGCACGCC     <  2:226647/89‑1                                                                                                                                                                                          GTGCTGACCCTGTTCAGCCTGCTGGTGACGCTGTCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGTTTGGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5118710‑5118857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgcGCCCATCTTGTTGAAGTCCTTGGCCAGCACGCCAAA  <  NC_002947/5118883‑5118848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.