New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5118857	47 (0.830)	3 (0.060)	3/246	NT	5.9%	coding (631/1341 nt)	PP_4505	sensor histidine kinase
	?	NC_002947	= 5118883	52 (0.970)					coding (657/1341 nt)	PP_4505	sensor histidine kinase

CCCTGTTCAGCCTGCTGGTGACGCTGTCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGC  >  NC_002947/5118717‑5119001                                                                                                                                              |                                                                                                                                                 cccTGTTCAGCCTGCTGGTGACGCTGTCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAg                                                                                                                                          <  3:148633/149‑1 (MQ=255)   cTGTTCAGCCTGCTGGTGACGCTGTCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGa                                                                                                                                        <  3:190971/149‑1 (MQ=255)        cAGCCTGCTGGTGACGCTGTCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGCCCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTc                                                                                                                                    >  1:104284/1‑148 (MQ=255)                 ggTGACGCTGTCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATgg                                                                                                                          <  7:326742/149‑1 (MQ=255)                   tGACTCTGTCCATTACGGGCCCGCTCAGCCGGCTGGGCAGTGCCGGACTCGACCTGGGCCAGACCTCCTATCTGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGAGGAGT‑TTGGCGTGCTGGCCTAGGACTTCAACATGATGGgc                                                                                                                        <  6:274505/149‑1 (MQ=255)                           tCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCt                                                                                                                >  5:71311/1‑149 (MQ=255)                             cATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCgcccatcttgttgaagtccttggccagcacgccaaa                                                                                                              <  3:50104‑M1/149‑37 (MQ=255)                             cATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTg                                                                                                               >  1:210040/1‑148 (MQ=255)                              aTTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGc                                                                                                              >  3:259052/1‑148 (MQ=255)                                     gcccgcTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAg                                                                                                          <  4:64946/145‑1 (MQ=255)                                     gcccgcTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAg                                                                                                          >  3:64946/1‑145 (MQ=255)                                     gcccgcTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCAc                                                                                                       >  7:242200/1‑148 (MQ=255)                                           tAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTgg                                                                                                 >  1:139676/1‑148 (MQ=255)                                             aGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGca                                                                                               <  2:210040/148‑1 (MQ=255)                                             aGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGca                                                                                               <  6:165508/148‑1 (MQ=255)                                                           tGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCaaa                                                                                                           >  3:153836/1‑122 (MQ=255)                                                           tGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCaaa                                                                                                           <  4:153836/122‑1 (MQ=255)                                                             ccGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTa                                                                              >  2:359607/1‑149 (MQ=255)                                                             ccGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTa                                                                              <  4:259052/149‑1 (MQ=255)                                                              cGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTAc                                                                             <  1:359607/149‑1 (MQ=255)                                                                tACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTAcgc                                                                           >  5:130846/1‑149 (MQ=255)                                                                  cacGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAATGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGa                                                                         <  1:232002/149‑1 (MQ=255)                                                                   acGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGAc                                                                        <  2:167607/149‑1 (MQ=255)                                                                           ggCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTcc                                                                  <  2:139676/147‑1 (MQ=255)                                                                                gACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAAc                                                           <  6:130846/149‑1 (MQ=255)                                                                                 accaccTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACt                                                          >  3:104866/1‑149 (MQ=255)                                                                                    accTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTgcg                                                       >  5:288327/1‑149 (MQ=255)                                                                                      cTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCgcccatcttgttgaagtccttggccagcacgcc                                                                                                                 >  1:226647‑M1/1‑56 (MQ=255)                                                                                      cTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCgcccatcttgttgaagtccttggccagcacgcc                                                                                                                 <  2:226647‑M1/89‑34 (MQ=255)                                                                                      cTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGAc                                                                        >  7:211555/1‑130 (MQ=255)                                                                                      cTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGAc                                                                        <  8:211555/130‑1 (MQ=255)                                                                                       tATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTgg                                                                                                                                               <  4:30018/58‑1 (MQ=255)                                                                                       tATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTgg                                                                                                                                               >  3:30018/1‑58 (MQ=255)                                                                                        aTCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCg                                                   >  4:100301/1‑149 (MQ=255)                                                                                         tCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGc                                                  >  7:98803/1‑149 (MQ=255)                                                                                            gcagAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCAc                                               >  8:23741/1‑149 (MQ=255)                                                                                            gcagAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCAc                                               >  2:139419/1‑149 (MQ=255)                                                                                              agAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTg                                             <  7:23741/149‑1 (MQ=255)                                                                                                 aCAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGTGTTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGc                                           >  1:58475/1‑149 (MQ=255)                                                                                                    gCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCAc                                                               >  2:266611/1‑125 (MQ=255)                                                                                                    gCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTACAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCAc                                                               <  1:266611/125‑1 (MQ=255)                                                                                                     ccTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGc                                      >  6:18754/1‑149 (MQ=255)                                                                                                     ccTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGc                                      >  6:344666/1‑149 (MQ=255)                                                                                                         gCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTgcg                                  >  5:133868/1‑149 (MQ=255)                                                                                                               cTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTGCGCATCgc                            >  7:88910/1‑149 (MQ=255)                                                                                                                 ggCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTc                                                                   >  4:102858/1‑108 (MQ=255)                                                                                                                 ggCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTc                                                                   <  3:102858/108‑1 (MQ=255)                                                                                                                     gcgcggcgcgACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTGCGCATCgccctggc                      <  4:104866/149‑1 (MQ=255)                                                                                                                      cgcggcgcgACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCATAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTGCGCATCggcctggcc                     <  2:104284/149‑1 (MQ=255)                                                                                                                             cgacgaGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTGCGCATCGCCCTGGCCCTGGCCg              <  6:71311/149‑1 (MQ=255)                                                                                                                                cgaGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTGCGCATCGCCCTGGCCCTGGCCGAAc           >  8:41561/1‑149 (MQ=255)                                                                                                                                    t‑ttGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCgcacgccaaactcgtcgcgccgcgctgccagccgtgccaggctgttctgctgataggtggtctggcccaggtcgtgtacggcactgcgcaggcggcttagcgggcgggtaatg       <  3:50104‑M2/149‑114 (MQ=255)                                                                                                                                    t‑ttGGCGCGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTGCGCATCGCCCTGGCCCTGGCCGAACgcgc       >  2:253350/1‑149 (MQ=255)                                                                                                                                        ggCGTGCTGGCCAAGGACTTCAACAAGATGGGCgcacgccaaactcgtcgcgccgcgctgccagccgtgccaggctgttctgctgatag                                                                >  1:226647‑M2/1‑33 (MQ=255)                                                                                                                                        ggCGTGCTGGCCAAGGACTTCAACAAGATGGGCgcacgccaaactcgtcgcgccgcgctgccagccgtgccaggctgttctgctgatag                                                                <  2:226647‑M2/89‑57 (MQ=255)                                                                                                                                          cGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGc  <  5:344666/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                 CCCTGTTCAGCCTGCTGGTGACGCTGTCCATTACCCGCCCGCTAAGCCGCCTGCGCAGTGCCGTACACGACCTGGGCCAGACCACCTATCAGCAGAACAGCCTGGCACGGCTGGCAGCGCGGCGCGACGAGT‑TTGGCGTGCTGGCCAAGGACTTCAACAAGATGGGCGCACGCCTGCAAAGCACCATTGGCAGCCAGCGCCAGCTGCTACGCGACGTGTCCCACGAACTGCGCTCGCCACTGGCCCGGCTGCGCATCGCCCTGGCCCTGGCCGAACGCGCCGAGC  >  NC_002947/5118717‑5119001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.