New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5467363 =	58 (1.020)	4 (0.070)	4/248	NT	7.2%	coding (483/1002 nt)	rlpA	RlpA‑like lipoprotein
	?	NC_002947	5467409 =	48 (0.890)					coding (437/1002 nt)	rlpA	RlpA‑like lipoprotein

CAACCTGGCGAACGGCCGCAGCGTGATCCTTCGGGTGAACGACCGTGGCCCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5467417‑5467363 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgttcGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGTTCTGCCCGTGGAACTT  >  NC_002947/5467409‑5467518                                                                                                                                                                       CAACCTGGCGAACGGCCGCAGCGTGATCCTTCGGGTGAACGACCGTGGCCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGT                  >  7:337427/1‑149  AACCTGGCGAACGGCCGCAGCGTGATCCTTCGGGTGAACGACCGTGGCCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGTT                 >  1:192970/1‑149       GGCGAACGGCCGCAGCGTGATCCTTCGGGTGAACGACCGTGGCCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGTTCTGCC            >  3:224756/1‑149                 CGCAGCGTGATCCTTCGGGTGAACGACCGTGGCCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGTTCTGCCCGTGGAACTT  <  4:224756/149‑1                                                                                                                                                                       CAACCTGGCGAACGGCCGCAGCGTGATCCTTCGGGTGAACGACCGTGGCCCGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5467417‑5467363 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgttcGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGTTCTGCCCGTGGAACTT  >  NC_002947/5467409‑5467518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.