New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5467363 =	58 (1.020)	4 (0.070)	4/248	NT	7.2%	coding (483/1002 nt)	rlpA	RlpA‑like lipoprotein
	?	NC_002947	5467409 =	48 (0.890)					coding (437/1002 nt)	rlpA	RlpA‑like lipoprotein

CCTTCAGCACCATCGGCGGCGTTTGGCCGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGTTCTGCCC  >  NC_002947/5467215‑5467509                                                                                                                                                     |                                                                                                                                                   ccTTCAGCACCATCGGCGGCGTTTGGCCGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAg                                                                                                                                                    <  8:307693/149‑1 (MQ=255)      aGCACCATCGGCGGCGTTTGGCCGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACg                                                                                                                                                <  3:76717/148‑1 (MQ=255)      aGCACCATCGGCGGCGTTTGGCCGCGCTGAGCCCACCACTGCTGCGGATCGATACACTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACgg                                                                                                                                               <  7:197171/149‑1 (MQ=255)        cACCATCGGCGGCGTTTGGCCGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGc                                                                                                                                             >  2:53692/1‑149 (MQ=255)         aCCATCGGCGGCGTTTGGCCGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGTATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGcc                                                                                                                                            <  2:294929/149‑1 (MQ=255)                 cggcgTTTGGCCGCGCTGCGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGt                                                                                                                                    <  2:233866/149‑1 (MQ=255)                         ggCCGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCAc                                                                                                                                >  4:164220/1‑145 (MQ=255)                         ggCCGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCAc                                                                                                                                <  3:164220/145‑1 (MQ=255)                         ggCCGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCg                                                                                                                             >  6:291644/1‑148 (MQ=255)                           ccGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACggg                                                                                                                                              >  3:88171/1‑129 (MQ=255)                           ccGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACggg                                                                                                                                              <  4:88171/129‑1 (MQ=255)                               gcTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATc                                                                                                                      <  1:53692/149‑1 (MQ=255)                                      ccaccaCTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTc                                                                                                                                      >  6:99675/1‑126 (MQ=255)                                      ccaccaCTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGc                                                                                                               >  1:130485/1‑149 (MQ=255)                                       aagttccacgggcagaacactgccaacggcgagctgtacgacctgtatggcatgagcgcagcgcacaagaccctgccgctgccagcctatgtgcgggtgaccaacctggcGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCg                                                                                                              <  4:224756‑M1/39‑1 (MQ=255)                                                 ggcagaacactgccaacggcgagctgtacgacctgtatggcatgagcgcagcgcacaagaccctgccgctgccagcctatgtgcgggtgaccaacctggcGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGcc                                                                                                    >  3:224756‑M1/101‑149 (MQ=255)                                                     aTCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGt                                                                                                >  5:288782/1‑149 (MQ=255)                                                     aTCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCAGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCTGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCgg                                                                                                             <  7:261603/136‑1 (MQ=255)                                                     aTCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCAGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCTGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCgg                                                                                                             >  8:261603/1‑136 (MQ=255)                                                      aacactgccaacggcgagctgtacgacctgtatggcatgagcgcagcgcacaagaccctgccgctgccagcctatgtgcgggtgaccaacctggcGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGtt                                                                                               >  1:192970‑M1/96‑149 (MQ=255)                                                       acactgccaacggcgagctgtacgacctgtatggcatgagcgcagcgcacaagaccctgccgctgccagcctatgtgcgggtgaccaacctggcGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTg                                                                                              >  7:337427‑M1/95‑149 (MQ=255)                                                           aCCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCa                                                                                          >  5:331073/1‑149 (MQ=255)                                                             ccTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCAcc                                                                                        >  6:284416/1‑149 (MQ=255)                                                             ccTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCAcc                                                                                        >  2:4230/1‑149 (MQ=255)                                                             ccTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCACGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACAGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCAcc                                                                                        >  1:271917/1‑149 (MQ=255)                                                              cTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCAccc                                                                                       <  6:331073/149‑1 (MQ=255)                                                               tCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAgg                                                                                                 >  7:46603/1‑138 (MQ=255)                                                               tCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAgg                                                                                                 <  8:46603/138‑1 (MQ=255)                                                                caccgcgCATGTGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCg                                                                                      >  6:369977/4‑148 (MQ=255)                                                                      gcACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGATCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGAt                                                                                                                       <  4:202957/109‑1 (MQ=255)                                                                        acaTGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTTGCCAGGTTGGTCACCCGCACATAGGc                                                                             <  1:188580/149‑1 (MQ=255)                                                                          aTGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTg                                                                           >  4:162124/1‑149 (MQ=255)                                                                           tGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTgg                                                                          <  5:291644/149‑1 (MQ=255)                                                                              gcgGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAg                                                                       >  4:185360/1‑149 (MQ=255)                                                                                ggTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCg                                                                     >  2:235689/1‑149 (MQ=255)                                                                                    ccGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGTCAGCGGCa                                                                  <  3:132347/148‑1 (MQ=255)                                                                                    ccGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAg                                                                 >  1:255740/1‑149 (MQ=255)                                                                                      gATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGt                                                                                                <  5:68979/116‑1 (MQ=255)                                                                                      gATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGAAAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGt                                                                                                >  6:68979/1‑116 (MQ=255)                                                                                            ggCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTc                                                             <  5:369977/145‑1 (MQ=255)                                                                                            ggCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTtgt                                                         <  7:131813/149‑1 (MQ=255)                                                                                             gCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAgg                                                                <  6:201239/141‑1 (MQ=255)                                                                                             gCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAgg                                                                >  5:201239/1‑141 (MQ=255)                                                                                             gCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGACCACGGTCGTTCACCCGAAg                                                                                                                          <  4:305969/83‑1 (MQ=255)                                                                                             gCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGACCACGGTCGTTCACCCGAAg                                                                                                                          >  3:305969/1‑83 (MQ=255)                                                                                                  gCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGtgcgctg                                                   <  5:284416/149‑1 (MQ=255)                                                                                                  gCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACAGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGtgcgct                                                    <  2:271917/148‑1 (MQ=255)                                                                                                   ccGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGtgcgctgc                                                  >  6:323080/1‑149 (MQ=255)                                                                                                                cgGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGTCTGGCAGCGGCAGGGTCtt                                                           <  1:235976/127‑1 (MQ=255)                                                                                                                cgGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGCCTGGCAGCGGCAGGGTCtt                                                           >  2:235976/1‑127 (MQ=255)                                                                                                                   cagcaTAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAgg                                  <  2:130485/149‑1 (MQ=255)                                                                                                                     gcaTAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTc                                <  3:185360/149‑1 (MQ=255)                                                                                                                           gACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAg                                   <  2:5365/140‑1 (MQ=255)                                                                                                                           gACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAg                                   >  1:5365/1‑140 (MQ=255)                                                                                                                               aGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCg                      <  1:235689/149‑1 (MQ=255)                                                                                                                                gTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGc                     >  4:14111/1‑149 (MQ=255)                                                                                                                                 tCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAg                                                                                                  <  1:231570/71‑1 (MQ=255)                                                                                                                                 tCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAg                                                                                                  >  2:231570/1‑71 (MQ=255)                                                                                                                                 tCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGcc                    >  7:122203/1‑149 (MQ=255)                                                                                                                                 tCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGcc                    <  1:4230/149‑1 (MQ=255)                                                                                                                                    atgatTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGtt                 <  2:255740/149‑1 (MQ=255)                                                                                                                                       atTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTgg               <  5:323080/148‑1 (MQ=255)                                                                                                                                            gtcggAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAgtgt         >  3:197277/1‑149 (MQ=255)                                                                                                                                              cggAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGTTc       >  3:59435/1‑149 (MQ=255)                                                                                                                                                   tAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGTTCTGccc  <  4:197277/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCTTCAGCACCATCGGCGGCGTTTGGCCGCGCTGAGCCCACCACTGCTGCGGATCGATACCCTCGACGCGCACATGCGCGGTGCCGATCTCGGCATAGCCGAGCTTTTTCGCGGCAGCATAGGACAAGTCGATGATTCGGTCGGAATAGAACGGGCCACGGTCGTTCACCCGAAGGATCACGCTGCGGCCGTTCGCCAGGTTGGTCACCCGCACATAGGCTGGCAGCGGCAGGGTCTTGTGCGCTGCGCTCATGCCATACAGGTCGTACAGCTCGCCGTTGGCAGTGTTCTGCCC  >  NC_002947/5467215‑5467509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.