New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5634606 =	44 (0.780)	3 (0.060)	3/242	NT	7.6%	intergenic (+182/+201)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
	?	NC_002947	5634672 =	32 (0.610)					intergenic (+248/+135)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein

TCCAACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5634756‑5634606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGT  >  NC_002947/5634672‑5634819                                                                                                                                                                                                                                                                                                             TCCAACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCG                                                                                                                                                        <  2:267098/149‑1    AACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGA                                                                                                                                                       >  3:90105/1‑147                                              AGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCC                                                                                                                                                           <  7:320404/101‑1                                              AGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCC                                                                                                                                                           >  8:320404/1‑101                                                                                      TTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTT                                                                    >  4:251846/1‑148                                                                                        CGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTT                                                                    <  3:251846/146‑1                                                                                                  CCCGCTCCTACACGACGGCCTGTGCAAGTGTATAGGGGCGGGTTTACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCTTTCACTGTTGCCGCCACCACAGTATTAAGGCAAGTGGAAGCGCGGTTTGGATCGGGGACT                                                        >  2:320407/1‑148                                                                                                                                                CCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCCTTCACTGTTGCCGCCACCTCCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAAC         <  2:352846/149‑1                                                                                                                                                CCCGCGAAGAGGCCGGACCTGCAGGCGAATTTCTAGCCGCCGTTCACTGTTGCCGCCACCACCGTATAAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAAC         <  2:347278/149‑1                                                                                                                                                 CCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAAC         >  2:67806/1‑148                                                                                                                                                  CGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCActcca       >  6:280099/1‑144                                                                                                                                                   GCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCAT      <  6:19666/149‑1                                                                                                                                                     GAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTG    <  5:309979/149‑1                                                                                                                                                       AGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGT  <  4:287997/149‑1                                                                                                                                                                                                                                                                                                             TCCAACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5634756‑5634606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGT  >  NC_002947/5634672‑5634819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.