New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5634606 =	44 (0.780)	3 (0.060)	3/242	NT	7.6%	intergenic (+182/+201)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
	?	NC_002947	5634672 =	32 (0.610)					intergenic (+248/+135)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein

CATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGT  >  NC_002947/5634529‑5634819                                                                                                                                                |                                                                                                                                                    cATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGcc                                                                                                                                                <  7:75043/149‑1 (MQ=255)  aTGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGcc                                                                                                                                                <  6:346395/148‑1 (MQ=255)  aTGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                                                                                               <  2:364393/149‑1 (MQ=255)       aaCGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACct                                                                                                                                          >  6:239480/1‑149 (MQ=255)           gTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACctgctg                                                                                                                                      <  6:78009/149‑1 (MQ=255)                ttGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCaa                                                                                                                                 >  8:337070/1‑149 (MQ=255)                ttGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCaa                                                                                                                                 <  8:186755/149‑1 (MQ=255)                  gggTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAAtt                                                                                                                               >  4:35256/1‑149 (MQ=255)                         ttctGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTAccc                                                                                                                        >  3:287997/1‑149 (MQ=255)                           ctGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTACGAGCGCGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACccgc                                                                                                                      >  1:347278/1‑149 (MQ=255)                           ctGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCCGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGACGGACCTGCTGGCCAATTTCTAccctc                                                                                                                      >  1:352846/1‑147 (MQ=255)                            tgttgtTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAag                                                                                                                                                     <  8:326315/117‑1 (MQ=255)                            tgttgtTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAag                                                                                                                                                     >  7:326315/1‑117 (MQ=255)                                   aCCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACACGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACt                                                                                                              >  7:204978/1‑149 (MQ=255)                                          aTCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTgcc                                                                                                        <  5:239480/148‑1 (MQ=255)                                                            gCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAgg                                                                                      >  2:150837/1‑148 (MQ=255)                                                              tGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACAAATGCACAGGCCGTCGTGTAGGAGCGGTTTCACCCGCGAAGAGGCCGGACCGGATGGCAAATTTATAACCGCCGTAAACTGTTGCCGCCACCACCGAATTAAGGCaa                                                                                   >  6:309979/1‑149 (MQ=255)                                                                    tgCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCTCAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTgg                                                                               <  2:335760/146‑1 (MQ=255)                                                                            cTTTCGCGGGTAAACCCGCCCGTATACACATGCACAGGCCGTCGTGTAGGATCGGGTTCACACGCGAAGAGGCATGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCTCCACCACCGTAt                                                                                           <  1:60159/127‑1 (MQ=255)                                                                            cTTTCGCGGGTAAACCCGCCCCTATACACATGCAGAGGCCGTCGTGTAGGATCTGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCAGTGTTGCCGCCACCACCGTATTAAGGc                                                                                     <  3:8604/133‑1 (MQ=255)                                                                            cTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCggg                                                                      <  1:304922/148‑1 (MQ=255)                                                                            cTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTAGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACATGCTGGCCAATTTCTACCCGCCGTTCACTGTTGACGCCACCACCGTAt                                                                                           >  2:60159/1‑127 (MQ=255)                                                                              ttcgcgggtgaacccgctcctacacgacggcctgtgcatgtgtataggggcgggtttacccgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGtt                                                                    >  4:251846‑M2/67‑148 (MQ=255)                                                                               TCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGtt                                                                    >  3:90105‑M1/1‑147 (MQ=255)                                                                                cgcgggtgaacccgctcctacacgacggcctgtgcatgtgtataggggcgggtttacccgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGtt                                                                    <  3:251846‑M2/82‑1 (MQ=255)                                                                                CGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGa                                                                 <  2:267098‑M1/149‑1 (MQ=255)                                                                                   GGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACt                                                                                                              <  7:320404‑M1/101‑1 (MQ=255)                                                                                   GGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACt                                                                                                              >  8:320404‑M1/1‑101 (MQ=255)                                                                                          cccgctcctacacgacggcctgtgcaagtgtataggggcgggtttacccgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCTTTCACTGTTGCCGCCACCACAGTATTAAGGCAAGTGGAAGCGCGGTTTGGATCGGGGACt                                                        >  2:320407‑M2/55‑148 (MQ=255)                                                                                            cGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATc                                                     <  7:337070/149‑1 (MQ=255)                                                                                               cccTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCgg                                                  <  8:204978/149‑1 (MQ=255)                                                                                                 cTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAg                                                <  1:267098/149‑1 (MQ=255)                                                                                                     acacATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGaa                                                                             >  3:356503/1‑116 (MQ=255)                                                                                                     acacATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGaa                                                                             <  4:356503/116‑1 (MQ=255)                                                                                                         aTGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATc                                                               >  2:228741/1‑126 (MQ=255)                                                                                                         aTGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATc                                                               <  1:228741/126‑1 (MQ=255)                                                                                                             acaGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCgg                                                  <  5:8561/135‑1 (MQ=255)                                                                                                             acaGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCgg                                                  >  6:8561/1‑135 (MQ=255)                                                                                                                 gCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGTTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACagag                                >  1:97051/1‑149 (MQ=255)                                                                                                                             gAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCaa                      >  5:93983/1‑147 (MQ=255)                                                                                                                                cGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGtt                 >  5:19666/1‑149 (MQ=255)                                                                                                                                    ttCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCt              >  6:202586/1‑148 (MQ=255)                                                                                                                                        cccgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCCTTCACTGTTGCCGCCACCTCCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAAc         <  2:352846‑M2/141‑1 (MQ=255)                                                                                                                                        cccgcgaaGAGGCCGGACCTGCAGGCGAATTTCTAGCCGCCGTTCACTGTTGCCGCCACCACCGTATAAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAAc         <  2:347278‑M2/141‑1 (MQ=255)                                                                                                                                         ccgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAAc         >  2:67806‑M2/8‑148 (MQ=255)                                                                                                                                          cgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTtgctcactcca       >  6:280099‑M2/7‑144 (MQ=255)                                                                                                                                           gcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCAt      <  6:19666‑M2/144‑1 (MQ=255)                                                                                                                                             gaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTg    <  5:309979‑M2/146‑1 (MQ=255)                                                                                                                                               aGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGt  <  4:287997‑M2/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    CATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGT  >  NC_002947/5634529‑5634819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.