New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5657326 =	51 (0.900)	3 (0.060)	3/246	NT	5.7%	coding (369/1998 nt)	tktA	transketolase A
	?	NC_002947	5657374 =	51 (0.950)					coding (321/1998 nt)	tktA	transketolase A

CTCGCTGCTGCACCTGACCGGCTACGACGTCACCATCGATGACATCAAAGGCTTCCGCCAACTGCACAGCCGCACCCCGGGCCACCCGGAATACGGCTACACCCCAGGCGTTGAAACCACCACCGGCCCGCTCGGCCAGGGTATCGCCAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5657479‑5657326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacgccTGGGGTGTAGCCGTATTCCGGGTGGCCCGGGGTGCGGCTGTGCAGTTGGCGGAAGCCTTTGATGTCATCGATGGTGACGTCGTAGCCGGTCAGGTGCAGCAGCGAGTAGATCAGCATCGAGCCGTGGCCGTTGGACAGCACGAAGC  >  NC_002947/5657374‑5657519                                                                                                                                                                                                                                                                                                              CTCGCTGCTGCACCTGACCGGCTACGACGTCACCATCGATGACATCAAAGGCTTCCGCCAACTGCACAGCCGCACCCCGGGCCACCCGGAATACGGCTACACCCCAGGCGTTGAAACCACCACCGGCCCGCTCGGCCAGGGTATCGCC                                                                                                                                                          >  6:341689/1‑148                                                                                                       CCCAGGCGTTGAAACCACCACCGGCCCGCTCGGCCAGGGTATCGCCAACGCATGGGGTGTAGCCGTATTCCGGGTGGCCCGGGGTGCGGCTGTGCAGTTGGCGGAAGCCTTTGATGTCATCGATGGTGACGTCGTAGCCGGTCAGGTG                                                    >  3:53295/1‑148                                                                                                         CAGGCGTTGAAACCACCACCGGCCCGCTCGGCCAGGGTATCGCCAACGCCTGGGGTGTAGCCGTATTCCGGGTGGCCCGGGGTGCGGCTGTGCAGTTGGCGGAAGCCTTTGACGTCATCGATGGTGACGTCGTAGCCGGTCAGGTGCAG                                                 >  7:176393/1‑149                                                                                                                   AACCACCACCGGCCCGCTCGGCCAGGGTATCGCCAACGCCTGGGGTGTAGCCGTATTCCGGGTGGCCCGGGGTGCGGCTGTGCAGTTGGCGGAAGCCTTTGATGTCATCGATGGTGACGTCGTAGCCGGTCAGGTGCAGCAGCGAGTA                                        <  4:53295/148‑1                                                                                                                                                     AACGCCTGGGGTGTAGCCGTATTCCGGGTGGCCCGGGGTGCGGCTGTGCAGTTGGCGGAAGCCTTTGATGTCATCGATG                                                                           >  3:46078/1‑79                                                                                                                                                     AACGCCTGGGGTGTAGCCGTATTCCGGGTGGCCCGGGGTGCGGCTGTGCAGTTGGCGGAAGCCTTTGATGTCATCGATG                                                                           <  4:46078/79‑1                                                                                                                                                      ACGCCTGGGGTGTAGCCGTATTCCGGGTGGCCCGGGGTGCGGCTGTGCAGTTGGCGGAAGCCTTTGACGTCATCGATGGTGACGTCGTAGCCGGTCAGGTGCAGCAGCGAGTAGATCAGCATCGAGCCGTGGCCGTTGGACAGCACGAA    <  8:176393/149‑1                                                                                                                                                        GCCTGGGGTGTAGCCGTATTCCGGGTGGCCCGGGGTGCGGCTGTGCAGTTGGCGGAAGCCTTTGATGTCATCGATGGTGACGTCGTAGCCGGTCAGGTGCAGCAGCGAGTAGATCAGCATCGAGCCGTGGCCGTTGGACAGCACGAAGC  >  1:342548/1‑149                                                                                                                                                                                                                                                                                                              CTCGCTGCTGCACCTGACCGGCTACGACGTCACCATCGATGACATCAAAGGCTTCCGCCAACTGCACAGCCGCACCCCGGGCCACCCGGAATACGGCTACACCCCAGGCGTTGAAACCACCACCGGCCCGCTCGGCCAGGGTATCGCCAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5657479‑5657326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacgccTGGGGTGTAGCCGTATTCCGGGTGGCCCGGGGTGCGGCTGTGCAGTTGGCGGAAGCCTTTGATGTCATCGATGGTGACGTCGTAGCCGGTCAGGTGCAGCAGCGAGTAGATCAGCATCGAGCCGTGGCCGTTGGACAGCACGAAGC  >  NC_002947/5657374‑5657519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.