New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5747542 =	60 (1.060)	3 (0.050)	3/252	NT	5.4%	coding (432/1422 nt)	PP_5043	PhoPQ‑activated pathogenicity‑like protein
	?	NC_002947	5747589 =	48 (0.870)					coding (385/1422 nt)	PP_5043	PhoPQ‑activated pathogenicity‑like protein

GGCGGAGAAAGCGTTGGTAGTAGTCAATAACGGTGTGAGGTTTGGTGAGGAACAACAAATCCCTGACTACTCGTCCGAGGCGTTGAGTGCCATTGCCGTGCAGACACAGACTGTTGTGGCATCGATCAGCGATGTGCCCA‑ACCAGTATGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5747692‑5747542 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTG  >  NC_002947/5747589‑5747705                                                                                                                                                                                                                                                                               GGCGGAGAAAGCGTTGTTAGTAGTCAATAACGGTGTGAGGTTTGGTGAGGAACAACAAATCCCTGACTACTCGTCCGAGGCGTTGAGTGCCATTGCCGTGCAGACACAGACTGTTGTGGCATCGATCAGCGATGTGCCCA‑ACCAGTAT                                                                                                                          <  6:269786/148‑1  GCGGAGAAAGCGTTGGTAGTAGTCAATAACGGTGTGAGGTTTGGTGAGGAACAACAAATCCCTGACTACTCGTCCGAGGCGTTGAGTGCCATTGCCGTGCAGACACAGACTGTTGTGGCATCGATCAGCGATGTGCCCA‑ACCAGTATGT                                                                                                                        <  7:170075/149‑1                                                                                                  GTGCAGACACAGACTGTTGTGGCATCGATCAGCGATGTGCCCAGACCAGTATGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGC                         >  1:252542/1‑149                                                                                                   TGCAGACACAGACTGTTGTGGCATCGATCAGCGATGTGCCCA‑ACAAGTATGTGTCTGCACGGCAATGGCACTCAACGCCTCGGCCGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGGTATTGACTGCTACCAACGCTT                       >  1:253746/1‑149                                                                                                        ACACAGACTGTTGTGGCATCGATCAGCGATGTGCCCA‑ACCAGTATGTGTCTGCACGGCAATGGCACTCTACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCC                  >  8:57361/1‑149                                                                                                                                                     TGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTG  >  1:245113/1‑121                                                                                                                                                     TGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTG  <  2:245113/121‑1                                                                                                                                                                                                                                                                               GGCGGAGAAAGCGTTGGTAGTAGTCAATAACGGTGTGAGGTTTGGTGAGGAACAACAAATCCCTGACTACTCGTCCGAGGCGTTGAGTGCCATTGCCGTGCAGACACAGACTGTTGTGGCATCGATCAGCGATGTGCCCA‑ACCAGTATGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5747692‑5747542 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTG  >  NC_002947/5747589‑5747705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.