New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5747542 =	60 (1.060)	3 (0.050)	3/252	NT	5.4%	coding (432/1422 nt)	PP_5043	PhoPQ‑activated pathogenicity‑like protein
	?	NC_002947	5747589 =	48 (0.870)					coding (385/1422 nt)	PP_5043	PhoPQ‑activated pathogenicity‑like protein

AGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGCACGAACAGTTCGACGCGGTGCTCC  >  NC_002947/5747441‑5747731                                                                                                                                                       |                                                                                                                                               ggagaaagcgttggtagtagtcaataacggtgtgaggtttggtgaggaacaacaaatccctgactactcgtccgaggcgtagagtgccattgccgtgcagaCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTgtgt                                                                                                                                                >  8:57361‑M1/102‑149 (MQ=255) aGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTgtgt                                                                                                                                                <  2:362523/149‑1 (MQ=255)   cGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCt                                                                                                                                              <  6:88315/149‑1 (MQ=255)      aagcgttggtagcagtcaataccggtgtgaggtttggtgaggaacaacaaatccctgactactcggccgaggcgttgagtgccattgccgtgcagaCACATACTTGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCa                                                                                                                                           >  1:253746‑M1/97‑149 (MQ=255)       aGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCAc                                                                                                                                          >  7:266488/1‑149 (MQ=255)        gcgttggtagtagtcaataacggtgtgaggtttggtgaggaacaacaaatccctgactactcgtccgaggcgttgagtgccattgccgtgcagaCACATACTGGTCTGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCAc                                                                                                                                          >  1:252542‑M1/95‑149 (MQ=255)         cgccGGAGCTGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACgg                                                                                                                                        <  1:16534/147‑1 (MQ=255)            cGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCaa                                                                                                                                     >  3:82809/1‑149 (MQ=255)             ggCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAAt                                                                                                                                    <  1:151297/149‑1 (MQ=255)                   gCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCa                                                                                                                                           >  8:260762/1‑136 (MQ=255)                   gCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCa                                                                                                                                           <  7:260762/136‑1 (MQ=255)                      gCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATg                                                                                                                                   >  8:158704/1‑141 (MQ=255)                      gCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATg                                                                                                                                   <  7:158704/141‑1 (MQ=255)                           gTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGcc                                                                                                                       <  4:82809/148‑1 (MQ=255)                                    ccAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGTATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGagt                                                                                                             <  7:302210/149‑1 (MQ=255)                                          cgcCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGTCCTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTc                                                                                                         <  1:257495/148‑1 (MQ=255)                                           gcCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCCCGGAAGGTCACATTCTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAgg                                                                                                      <  8:74065/149‑1 (MQ=255)                                                 gTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATttg                                                                                                >  5:323303/1‑149 (MQ=255)                                                 gTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATttg                                                                                                <  4:171965/149‑1 (MQ=255)                                                  tATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGa                                                                                                               <  5:271931/133‑1 (MQ=255)                                                  tATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGa                                                                                                               >  6:271931/1‑133 (MQ=255)                                                      ggCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTtgttgt                                                                                            <  1:248187/148‑1 (MQ=255)                                                         cACGGCATCATACTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCt                                                                                        >  4:338089/1‑149 (MQ=255)                                                           cGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCa                                                                                      <  6:154769/149‑1 (MQ=255)                                                                   tcCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTcc                                                                                         <  3:325452/138‑1 (MQ=255)                                                                   tcCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTcc                                                                                         >  4:325452/1‑138 (MQ=255)                                                                     cTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGc                                                                                                                                            <  3:338204/85‑1 (MQ=255)                                                                     cTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGc                                                                                                                                            >  4:338204/1‑85 (MQ=255)                                                                           cATCGGCGCTTGTGCATCTCGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGt                                                                      >  5:132724/1‑149 (MQ=255)                                                                           cATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGt                                                                      >  2:279018/1‑149 (MQ=255)                                                                             tCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTa                                                                    <  2:230907/149‑1 (MQ=255)                                                                               ggCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTAtt                                                                  <  1:279018/149‑1 (MQ=255)                                                                                  gcTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGa                                                                                                               <  1:143305/101‑1 (MQ=255)                                                                                  gcTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGa                                                                                                               >  2:143305/1‑101 (MQ=255)                                                                                  gcTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGac                                                               >  1:40680/1‑149 (MQ=255)                                                                                        gCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACtactac                                                         >  8:198544/1‑149 (MQ=255)                                                                                        gCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACtactac                                                         >  2:27429/1‑149 (MQ=255)                                                                                         cATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACtactac                                                         <  8:203807/148‑1 (MQ=255)                                                                                           tCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCaa                                                      >  6:281411/1‑149 (MQ=255)                                                                                                gtgcagacacagactgttgtggcatcgatcagcgatgtgcccagaccagtatgtgTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGc                                                   >  1:252542‑M2/56‑149 (MQ=255)                                                                                                  tgcagacacagactgttgtggcatcgatcagcgatgtgcccaacaagtatgtgTCTGCACGGCAATGGCACTCAACGCCTCGGCCGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGGTATTGACTGCTACCAACGCtt                                                 >  1:253746‑M2/54‑149 (MQ=255)                                                                                                       acacagactgttgtggcatcgatcagcgatgtgcccaaccagtatgtgTCTGCACGGCAATGGCACTCTACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTcc                                            >  8:57361‑M2/49‑149 (MQ=255)                                                                                                       ACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGc                                          <  7:170075‑M1/149‑1 (MQ=255)                                                                                                         ATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTAACAACGCTTTCTCCGcc                                         <  6:269786‑M1/148‑1 (MQ=255)                                                                                                           aCTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCt                                                  <  5:212301/137‑1 (MQ=255)                                                                                                           aCTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCt                                                  >  6:212301/1‑137 (MQ=255)                                                                                                           aCTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAAt                                      >  3:352008/1‑149 (MQ=255)                                                                                                            cTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAAt                                      <  3:338089/148‑1 (MQ=255)                                                                                                               gT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCa                                  >  4:168702/1‑149 (MQ=255)                                                                                                               gT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCa                                  <  8:266488/149‑1 (MQ=255)                                                                                                                    ggCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGt                               <  6:323303/148‑1 (MQ=255)                                                                                                                     gCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTGCTCACCAACCCTCACACCGTTATTTAGTACTACCAACGCTTTCTCAGCCAATGCACCGTCt                             >  7:251099/1‑149 (MQ=255)                                                                                                                       acaTCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTgg                           >  1:127588/1‑149 (MQ=255)                                                                                                                         aTCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGag                                                                                                              >  6:33533/1‑64 (MQ=255)                                                                                                                         aTCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGag                                                                                                              <  5:33533/64‑1 (MQ=255)                                                                                                                                aTCGTTGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTTTTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGCACGAACAg                  <  1:6566/149‑1 (MQ=255)                                                                                                                                       ccACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGCACGAACAGTTCGAcg           <  7:198544/149‑1 (MQ=255)                                                                                                                                        cacaACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGc                          >  7:319189/1‑133 (MQ=255)                                                                                                                                        cacaACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGc                          <  8:319189/133‑1 (MQ=255)                                                                                                                                        cacaACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGCACGAACAGTTCGAcgc          <  1:27429/149‑1 (MQ=255)                                                                                                                                              aGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGCACGAACAGTTCGACGCGGTGCt    <  8:170075/149‑1 (MQ=255)                                                                                                                                               gT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGCACGAACAGTTCGACGCGGTGCTc   <  5:269786/149‑1 (MQ=255)                                                                                                                                                t‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGCACGAACAGTTCGACGCGGTGCTcc  <  5:281411/149‑1 (MQ=255)                                                                                                                                                   tgtgTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTg                            <  2:245113‑M2/117‑1 (MQ=255)                                                                                                                                                   tgtgTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTg                            >  1:245113‑M2/5‑121 (MQ=255)                                                                                                                                                       |                                                                                                                                               AGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAACGCTTTCTCCGCCAATGCCACGTCTGGCACGAACAGTTCGACGCGGTGCTCC  >  NC_002947/5747441‑5747731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.