New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5747542 =	60 (1.060)	3 (0.050)	3/252	NT	5.4%	coding (432/1422 nt)	PP_5043	PhoPQ‑activated pathogenicity‑like protein
	?	NC_002947	5747589 =	48 (0.870)					coding (385/1422 nt)	PP_5043	PhoPQ‑activated pathogenicity‑like protein

AGGTCCATGCCCCTGCTGGCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAA  >  NC_002947/5747399‑5747679                                                                                                                                                |                                                                                                                                            aGGTCCATGCCCCTGCTGGCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCGCGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATa                                                                                                                                        >  6:298139/1‑149 (MQ=255)   gTCCATGCCCCTGCTGGCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACt                                                                                                                                      >  3:325483/1‑149 (MQ=255)          ccccTGCTGGCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑Tggg                                                                                                                              <  2:126594/149‑1 (MQ=255)          ccccTGCTGGCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑Tggg                                                                                                                              >  3:171965/1‑149 (MQ=255)            ccTGCTGGCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTcaca                                                                                                                                          <  3:342714/136‑1 (MQ=255)            ccTGCTGGCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTcaca                                                                                                                                          >  4:342714/1‑136 (MQ=255)                 tgGCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCg                                                                                                                       >  1:362523/1‑149 (MQ=255)                  ggCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑Tggg                                                                                                                              >  5:300206/1‑141 (MQ=255)                  ggCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑Tggg                                                                                                                              <  6:300206/141‑1 (MQ=255)                   gCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCGCGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCt                                                                                                                     <  5:298139/149‑1 (MQ=255)                   gCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGc                                                                                                                      <  3:356466/148‑1 (MQ=255)                     gACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGa                                                                                                                   >  4:94426/1‑149 (MQ=255)                       cAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATc                                                                                                                 <  4:325483/149‑1 (MQ=255)                           cagacgtggcattggcggagaaagcgttggtagtagtcaataacggtgtgaggtttggtgaggaacaacaaatccctgactactcgtccgaggcgttgagtgccattgccgtgcagacaca                                                                                                                                          >  1:245113‑M1/118‑121 (MQ=255)                           cagacgtggcattggcggagaaagcgttggtagtagtcaataacggtgtgaggtttggtgaggaacaacaaatccctgactactcgtccgaggcgttgagtgccattgccgtgcagacaca                                                                                                                                          <  2:245113‑M1/4‑1 (MQ=255)                             ccATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑Tg                                                                                                                                >  1:238087/1‑128 (MQ=255)                             ccATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑Tg                                                                                                                                <  2:238087/128‑1 (MQ=255)                             ccATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGcc                                                                                                           >  2:151297/1‑149 (MQ=255)                                     acaTGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAga                                                                                                   >  2:248187/1‑148 (MQ=255)                                     acaTGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGt                                                                                                   >  2:257495/1‑149 (MQ=255)                                      caTGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCt                                                                                                                     <  1:18027/130‑1 (MQ=255)                                      caTGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCt                                                                                                                     >  2:18027/1‑130 (MQ=255)                                        tGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑Ctg                                                                                               <  4:145999/149‑1 (MQ=255)                                          cAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCca                                                                                                          <  7:205568/137‑1 (MQ=255)                                          cAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCca                                                                                                          >  8:205568/1‑137 (MQ=255)                                          cAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑Ctgt                                                                                              <  3:94426/148‑1 (MQ=255)                                           ggagaaagcgttggtagtagtcaataacggtgtgaggtttggtgaggaacaacaaatccctgactactcgtccgaggcgtagagtgccattgccgtgcagaCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTgtgt                                                                                            >  8:57361‑M1/102‑149 (MQ=255)                                           aGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTgtgt                                                                                            <  2:362523/149‑1 (MQ=255)                                             cGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCt                                                                                          <  6:88315/149‑1 (MQ=255)                                                aagcgttggtagcagtcaataccggtgtgaggtttggtgaggaacaacaaatccctgactactcggccgaggcgttgagtgccattgccgtgcagaCACATACTTGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCa                                                                                       >  1:253746‑M1/97‑149 (MQ=255)                                                 aGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCAc                                                                                      >  7:266488/1‑149 (MQ=255)                                                  gcgttggtagtagtcaataacggtgtgaggtttggtgaggaacaacaaatccctgactactcgtccgaggcgttgagtgccattgccgtgcagaCACATACTGGTCTGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCAc                                                                                      >  1:252542‑M1/95‑149 (MQ=255)                                                   cgccGGAGCTGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACgg                                                                                    <  1:16534/147‑1 (MQ=255)                                                      cGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCaa                                                                                 >  3:82809/1‑149 (MQ=255)                                                       ggCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAAt                                                                                <  1:151297/149‑1 (MQ=255)                                                             gCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCa                                                                                       >  8:260762/1‑136 (MQ=255)                                                             gCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCa                                                                                       <  7:260762/136‑1 (MQ=255)                                                                gCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATg                                                                               >  8:158704/1‑141 (MQ=255)                                                                gCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATg                                                                               <  7:158704/141‑1 (MQ=255)                                                                     gTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGcc                                                                   <  4:82809/148‑1 (MQ=255)                                                                              ccAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGTATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGagt                                                         <  7:302210/149‑1 (MQ=255)                                                                                    cgcCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGTCCTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTc                                                     <  1:257495/148‑1 (MQ=255)                                                                                     gcCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCCCGGAAGGTCACATTCTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAgg                                                  <  8:74065/149‑1 (MQ=255)                                                                                           gTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATttg                                            <  4:171965/149‑1 (MQ=255)                                                                                           gTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATttg                                            >  5:323303/1‑149 (MQ=255)                                                                                            tATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGa                                                           <  5:271931/133‑1 (MQ=255)                                                                                            tATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGa                                                           >  6:271931/1‑133 (MQ=255)                                                                                              tGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGAt                                                                                                                  >  4:134066/1‑77 (MQ=255)                                                                                              tGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGAt                                                                                                                  <  3:134066/77‑1 (MQ=255)                                                                                                ggCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTtgttgt                                        <  1:248187/148‑1 (MQ=255)                                                                                                   cACGGCATCATACTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCt                                    >  4:338089/1‑149 (MQ=255)                                                                                                     cGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCa                                  <  6:154769/149‑1 (MQ=255)                                                                                                             tcCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTcc                                     >  4:325452/1‑138 (MQ=255)                                                                                                             tcCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTcc                                     <  3:325452/138‑1 (MQ=255)                                                                                                               cTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGc                                                                                        <  3:338204/85‑1 (MQ=255)                                                                                                               cTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGc                                                                                        >  4:338204/1‑85 (MQ=255)                                                                                                                     cATCGGCGCTTGTGCATCTCGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGt                  >  5:132724/1‑149 (MQ=255)                                                                                                                     cATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGt                  >  2:279018/1‑149 (MQ=255)                                                                                                                       tCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTa                <  2:230907/149‑1 (MQ=255)                                                                                                                         ggCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTAtt              <  1:279018/149‑1 (MQ=255)                                                                                                                            gcTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGa                                                           >  2:143305/1‑101 (MQ=255)                                                                                                                            gcTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGa                                                           <  1:143305/101‑1 (MQ=255)                                                                                                                            gcTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGac           >  1:40680/1‑149 (MQ=255)                                                                                                                                  gCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACtactac     >  8:198544/1‑149 (MQ=255)                                                                                                                                  gCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACtactac     >  2:27429/1‑149 (MQ=255)                                                                                                                                   cATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACtactac     <  8:203807/148‑1 (MQ=255)                                                                                                                                     tCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCaa  >  6:281411/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                            AGGTCCATGCCCCTGCTGGCGACAGCGGCCATTGGCACATGCAGCGGCAGCTCCGGCGCAGCCGCTTCGTTACGCAGCCAATGCGCCCAGGTATGGGCCACGGCATCATCCTCGCGCATCGGCGCTTGTGCATCACGGAAGGTCACATACTGGT‑TGGGCACATCGCTGATCGATGCCACAACAGT‑CTGTGTCTGCACGGCAATGGCACTCAACGCCTCGGACGAGTAGTCAGGGATTTGTTGTTCCTCACCAAACCTCACACCGTTATTGACTACTACCAA  >  NC_002947/5747399‑5747679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.