New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5863595	56 (0.990)	5 (0.090)	4/252	NT	8.1%	coding (294/870 nt)	PP_5138	LysR family transcriptional regulator
	?	NC_002947	= 5863625	59 (1.070)					coding (264/870 nt)	PP_5138	LysR family transcriptional regulator

CACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5863478‑5863595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCCAG‑GGCAGC‑CTGCGCATTGCTGCCACTGCGCCTTACTACATTCTCGACCTGGTCAAGATCTATCGCGAACGCCTGCCGCAGGTTGAAGTGGCGGTGGAGATCGGCAACTCGCAGCAGGTGCTGGAAATGCTCGAGGATTACCGG  <  NC_002947/5863625‑5863481                                                                                                                                                                                                                                                                           CACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCCCAG‑GGCAGC‑CTGCGCATTGCTGCCACTGCG                                                                                                                    >  2:341074/1‑149  ACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCCCAG‑GGCAGC‑CTGCGCATTGCTGCCACTGCGC                                                                                                                   <  1:341074/149‑1                                             CGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCCCAG‑GGCAGC‑CTGCGCATTGCTGCCACTGCGC                                                                                                                   <  7:74131/106‑1                                             CGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCCCAG‑GGCAGC‑CTGCGCATTGCTGCCACTGCGC                                                                                                                   >  8:74131/1‑106                                                                                                             GTAGTAAGGCGCAGTGGCAGCAATGCGCA‑GGCTGCC‑CTGGGCCTTACTACATTCTCGACCTGGTCAAGATCTATCGCGAACGCCTGCCGCAGGTTGAAGTGGCGGTGGAGATCGGCAACTCGCAGCAGGTGCTGGAAATGCTCGAGGAT        >  5:152916/1‑149                                                                                                                   AGGCCCAG‑GGCAGC‑CTGCGCATTGCTGCCACTGCGCCTTACTACATTCTCGACCTGGTCAAGATCTATCGCGAACGCCTGCCGCAGGTTGAAGTGGCGGTGGAGATCGGCAACTCGCAGCAGGTGCTGGAAATGCTCGAGGATTACCGG  >  3:339512/1‑149                                                                                                                     GCCCAG‑GGCAGC‑CTGCGCATTGCTGCCACTGCGCCTTACTACATTCTCGACCTGGTCAAGATCTATCGCGAACGCCTGCCGCAGGTTGAAGTGGCGGTGGAGATCGGCAACTCGCAGCAGGTGCTGGAAATGCTCGA            >  3:296934/1‑137                                                                                                                     GCCCAG‑GGCAGC‑CTGCGCATTGCTGCCACTGCGCCTTACTACATTCTCGACCTGGTCAAGATCTATCGCGAACGCCTGCCGCAGGTTGAAGTGGCGGTGGAGATCGGCAACTCGCAGCAGGTGCTGGAAATGCTCGA            <  4:296934/137‑1                                                                                                                                                                                                                                                                           CACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5863478‑5863595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCCAG‑GGCAGC‑CTGCGCATTGCTGCCACTGCGCCTTACTACATTCTCGACCTGGTCAAGATCTATCGCGAACGCCTGCCGCAGGTTGAAGTGGCGGTGGAGATCGGCAACTCGCAGCAGGTGCTGGAAATGCTCGAGGATTACCGG  <  NC_002947/5863625‑5863481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.