New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1055733 =	43 (0.760)	3 (0.060)	3/248	NT	7.1%	coding (99/1332 nt)	PP_0913	hypothetical protein
	?	NC_002947	1055773 =	37 (0.680)					coding (59/1332 nt)	PP_0913	hypothetical protein

GACCGCGGTCTGCAGCGTCTTGGCAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTG  >  NC_002947/1055586‑1055852                                                                                                                                                      |                                                                                                                        gACCGCGGTCTGCAGCGTCTTGGCAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCACTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCtt                                                                                                                        >  5:361354/1‑149 (MQ=255)  gcaaatctttcgcatgatgttgtagttttgcgtgccacggcgcacggtccacccctttggtccaaccacacgatgcaggaaaaccaataatgattcgaatgcctctggcctccgccagtctgctggccattgccatcgccctcgccggt                                                                                                                         <  4:70177‑M1/1‑1 (MQ=255)    cgcgGTCTGCAGCGTCTTGGCAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTgcg                                                                                                                     >  5:323734/1‑149 (MQ=255)    aaatctttcgcatgatgttgtagttttgcgtgccacggcgcacggtccacccctttggtccaaccacacgatgcaggaaaaccaataatgattcgaatgcctctggcctccgccagtctgctggccattgccatcgccctcgccggTTg                                                                                                                       >  8:91910‑M1/147‑149 (MQ=255)    aaatctttcgcatgatgttgtagttttgcgtgccacggcgcacggtccacccctttggtccaaccacacgatgcaggaaaaccaataatgattcgaatgcctctggcctccgccagtctgctggccattgccatcgccctcgccggTTg                                                                                                                       <  5:6236‑M1/3‑1 (MQ=255)       tctttcgcatgatgttgtagttttgcgtgccacggcgcacggtccacccctttggtccaaccccacgatgcaggaaaaccaataatgattcgaatgcctctggcctccgccagtctgctggccattgccatcgccctcgccggTTgcgg                                                                                                                    >  7:211656‑M1/144‑149 (MQ=255)             cAGCGTCTTGGCAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTgcggcgcggc                                                                                                              >  7:128250/1‑147 (MQ=255)             cAGCGTCTTGGCAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTgcggcgcggc                                                                                                              <  8:128250/147‑1 (MQ=255)             cAGCGTCTTGGCAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGcggcgg                                                                                                            >  6:330452/1‑149 (MQ=255)             cAGCGTCTTGGCAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGcggcgg                                                                                                            >  8:244507/1‑149 (MQ=255)                  tCTTGGCAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCtttt                                                                                                       >  3:72156/1‑149 (MQ=255)                      ggcAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTc                                                                                                     <  5:330452‑M2/144‑1 (MQ=255)                        cAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTcc                                                                                                 <  2:358388‑M2/148‑1 (MQ=255)                             cTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGc                                                                                             <  8:81179/148‑1 (MQ=255)                             cTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGc                                                                                             <  8:86211/148‑1 (MQ=255)                              tCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCt                                                                                           >  2:222091/1‑149 (MQ=255)                                aGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTc                                                                                         >  8:258917/1‑149 (MQ=255)                                 gCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCa                                                                                        <  4:242732/149‑1 (MQ=255)                                         gcgcacggtccacccctttggtccaaccacacgatgcaggaaaaccaataatgattcgaatgcctctggcctccgccagtctgctggccattgccatcgccctcgccggTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCaa                                                                                  >  6:6236‑M1/110‑149 (MQ=255)                                               acGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAg                                                                          >  3:241610/1‑149 (MQ=255)                                               acGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAg                                                                          >  6:5697/1‑149 (MQ=255)                                               acGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAg                                                                          <  5:5697/149‑1 (MQ=255)                                                cGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGcggcgcggcg                                                                                                             <  1:16845/113‑1 (MQ=255)                                                cGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGcggcgcggcg                                                                                                             >  2:16845/1‑113 (MQ=255)                                                cGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAgg                                                                         <  3:261162/149‑1 (MQ=255)                                                 ggCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAggg                                                                        <  7:258917/149‑1 (MQ=255)                                                 ggCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAggg                                                                        <  1:222091/149‑1 (MQ=255)                                                       gACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATg                                                                   <  2:270160/148‑1 (MQ=255)                                                          cATGTCGGTTTAATTGTTGACCACGGCGTTGCCGGGTGCTTCGTGGCCAGCCCCTGGCGCAGCGGTGGTGGCAGCTGCATGTGCCCATGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATg                                                                   <  1:285647/147‑1 (MQ=255)                                                          aaTGTCGCTGAAATGCTTGACCACGGCTTTGCCGGCTGCTTCCTCGACAGACCCACGCCCAGCGGTGGTGTCAGCATCAGCAGCC‑‑TGGGCTTCCGGCGCGCCCGATTTTTCGTCCTTGCCATCACCGCAACCGCCCAGGGCGATggag                                                                >  2:285647/2‑146 (MQ=255)                                                            tGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAggg                                                                        <  4:50115/138‑1 (MQ=255)                                                            tGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAggg                                                                        >  3:50115/1‑138 (MQ=255)                                                             gtccaaccacacgatgcaggaaaaccaataatgattcgaatgcctctggcctccgccagtctgctggccattgccatcgccctcgccggTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCg                                                                               <  5:143240‑M1/43‑1 (MQ=255)                                                             gtccaaccacacgatgcaggaaaaccaataatgattcgaatgcctctggcctccgccagtctgctggccattgccatcgccctcgccggTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCg                                                                               >  6:143240‑M1/90‑132 (MQ=255)                                                              tCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGc                                                           >  1:62791/1‑149 (MQ=255)                                                                ggTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGa                                                                           >  7:245220/1‑131 (MQ=255)                                                                ggTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGa                                                                           <  8:245220/131‑1 (MQ=255)                                                                    tAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCcagca                                                      <  4:241610/148‑1 (MQ=255)                                                                     aaTGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGa                                                    >  7:329716/1‑149 (MQ=255)                                                                         cTTGACCAGGGCTTTGCCGGCTTCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCATCCGGCGAGGGCGATGGCAATGGCCAGCAGACTg                                                 <  7:88852/148‑1 (MQ=255)                                                                            gACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGc                                               <  2:62791/147‑1 (MQ=255)                                                                             aCCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCgg                                             <  2:33366/148‑1 (MQ=255)                                                                                aCGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGc                                         >  3:130566/1‑149 (MQ=255)                                                                                                        aCAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGAc                                                   <  5:133342/115‑1 (MQ=255)                                                                                                        aCAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGAc                                                   >  6:133342/1‑115 (MQ=255)                                                                                                         cAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGt                >  4:289504/1‑149 (MQ=255)                                                                                                              ccgggCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTcc           <  2:66992/146‑1 (MQ=255)                                                                                                               cTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCt          <  6:323734/149‑1 (MQ=255)                                                                                                                  gcgcAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAgg                                          >  5:6139/1‑114 (MQ=255)                                                                                                                  gcgcAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAgg                                          <  6:6139/114‑1 (MQ=255)                                                                                                                    gcAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGTCATTCGAATCATTATTGGTTTTCCTGCATc     <  8:329716/149‑1 (MQ=255)                                                                                                                    gcAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTAATGGTTTTCCTGCATc     >  5:40762/1‑149 (MQ=255)                                                                                                                       gCGGTGGTGGCAGCAGCAGTTGCC‑‑TGGGCTTGCGGCGCGGGGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCgtg  <  6:361354/149‑1 (MQ=255)                                                                                                                       gCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCgtg  <  4:134769/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                        GACCGCGGTCTGCAGCGTCTTGGCAGTGCTCAGCGAGTCGCTGTACACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTG  >  NC_002947/1055586‑1055852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.