New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1055733 =	43 (0.760)	3 (0.060)	3/248	NT	7.1%	coding (99/1332 nt)	PP_0913	hypothetical protein
	?	NC_002947	1055773 =	37 (0.680)					coding (59/1332 nt)	PP_0913	hypothetical protein

ACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATGCGAAAGATTTGC  >  NC_002947/1055632‑1055920                                                                                                                                                |                                                                                                                                                    acGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAg                                                                                                                                              <  5:5697/149‑1 (MQ=255) acGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAg                                                                                                                                              >  6:5697/1‑149 (MQ=255) acGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAg                                                                                                                                              >  3:241610/1‑149 (MQ=255)  cGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAgg                                                                                                                                             <  3:261162/149‑1 (MQ=255)   ggCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAggg                                                                                                                                            <  1:222091/149‑1 (MQ=255)   ggCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAggg                                                                                                                                            <  7:258917/149‑1 (MQ=255)         gACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATg                                                                                                                                       <  2:270160/148‑1 (MQ=255)            cATGTCGGTTTAATTGTTGACCACGGCGTTGCCGGGTGCTTCGTGGCCAGCCCCTGGCGCAGCGGTGGTGGCAGCTGCATGTGCCCATGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATg                                                                                                                                       <  1:285647/147‑1 (MQ=255)            aaTGTCGCTGAAATGCTTGACCACGGCTTTGCCGGCTGCTTCCTCGACAGACCCACGCCCAGCGGTGGTGTCAGCATCAGCAGCC‑‑TGGGCTTCCGGCGCGCCCGATTTTTCGTCCTTGCCATCACCGCAACCGCCCAGGGCGATggag                                                                                                                                    >  2:285647/2‑146 (MQ=255)              tGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAggg                                                                                                                                            >  3:50115/1‑138 (MQ=255)              tGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAggg                                                                                                                                            <  4:50115/138‑1 (MQ=255)               gtccaaccacacgatgcaggaaaaccaataatgattcgaatgcctctggcctccgccagtctgctggccattgccatcgccctcgccggTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCg                                                                                                                                                   >  6:143240‑M1/90‑132 (MQ=255)               gtccaaccacacgatgcaggaaaaccaataatgattcgaatgcctctggcctccgccagtctgctggccattgccatcgccctcgccggTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCg                                                                                                                                                   <  5:143240‑M1/43‑1 (MQ=255)                tCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGc                                                                                                                               >  1:62791/1‑149 (MQ=255)                  ggTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGa                                                                                                                                               <  8:245220/131‑1 (MQ=255)                  ggTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGa                                                                                                                                               >  7:245220/1‑131 (MQ=255)                      tAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCcagca                                                                                                                          <  4:241610/148‑1 (MQ=255)                       aaTGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGa                                                                                                                        >  7:329716/1‑149 (MQ=255)                           cTTGACCAGGGCTTTGCCGGCTTCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCATCCGGCGAGGGCGATGGCAATGGCCAGCAGACTg                                                                                                                     <  7:88852/148‑1 (MQ=255)                              gACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGc                                                                                                                   <  2:62791/147‑1 (MQ=255)                               aCCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCgg                                                                                                                 <  2:33366/148‑1 (MQ=255)                                  aCGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGc                                                                                                             >  3:130566/1‑149 (MQ=255)                                                          aCAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGAc                                                                                                                       <  5:133342/115‑1 (MQ=255)                                                          aCAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGAc                                                                                                                       >  6:133342/1‑115 (MQ=255)                                                           cAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGt                                                                                    >  4:289504/1‑149 (MQ=255)                                                                ccgggCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTcc                                                                               <  2:66992/146‑1 (MQ=255)                                                                 cTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCt                                                                              <  6:323734/149‑1 (MQ=255)                                                                    gcgcAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAgg                                                                                                              <  6:6139/114‑1 (MQ=255)                                                                    gcgcAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAgg                                                                                                              >  5:6139/1‑114 (MQ=255)                                                                      gcAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGTCATTCGAATCATTATTGGTTTTCCTGCATc                                                                         <  8:329716/149‑1 (MQ=255)                                                                      gcAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTAATGGTTTTCCTGCATc                                                                         >  5:40762/1‑149 (MQ=255)                                                                         gCGGTGGTGGCAGCAGCAGTTGCC‑‑TGGGCTTGCGGCGCGGGGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCgtg                                                                      <  6:361354/149‑1 (MQ=255)                                                                         gCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCgtg                                                                      <  4:134769/149‑1 (MQ=255)                                                                                                     cggttgcggtgaaggcaaggacgaaaaagccgccgcgccgcaaCCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGAc                                                             <  5:143240‑M2/89‑1 (MQ=255)                                                                                                     cggttgcggtgaaggcaaggacgaaaaagccgccgcgccgcaaCCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGAc                                                             >  6:143240‑M2/44‑132 (MQ=255)                                                                                                        ttgcggtgaaggcaaggacgaaaaagccgccgcgccgcaaCCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTgcgc                                         >  6:6236‑M2/41‑149 (MQ=255)                                                                                                           CGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGCCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCg                                       >  3:260977‑M1/1‑148 (MQ=255)                                                                                                            GGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAgggg                                                     >  5:75385‑M1/1‑133 (MQ=255)                                                                                                            GGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAgggg                                                     <  6:75385‑M1/133‑1 (MQ=255)                                                                                                            GGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTg                                     <  1:360774‑M1/149‑1 (MQ=255)                                                                                                                  gcggcTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACg                                >  8:47560/1‑148 (MQ=255)                                                                                                                    ggcTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCaa                             <  3:289504/149‑1 (MQ=255)                                                                                                                      cTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCaaaa                           <  7:47560/149‑1 (MQ=255)                                                                                                                         tttCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCTGAGGCATTCGAATCATTATTAGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACt                         <  7:244507/148‑1 (MQ=255)                                                                                                                                 ttGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAAcatca                >  1:144060/1‑149 (MQ=255)                                                                                                                                   gCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATg              >  3:70177/1‑149 (MQ=255)                                                                                                                                     cTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTg                                     <  4:279723/124‑1 (MQ=255)                                                                                                                                     cTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTg                                     >  3:279723/1‑124 (MQ=255)                                                                                                                                       tCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTGCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATGCGa           >  8:40036/1‑148 (MQ=255)                                                                                                                                         aCCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATGCGa           >  3:283456/1‑146 (MQ=255)                                                                                                                                         aCCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATGCGa           >  5:281267/1‑146 (MQ=255)                                                                                                                                          ccgcaaCCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGGGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATGCGAAAGa       >  7:211656‑M2/7‑149 (MQ=255)                                                                                                                                             caaCCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATGCGAAAGAttt    >  8:91910‑M2/4‑149 (MQ=255)                                                                                                                                             caaCCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATGCGAAAGAttt    <  5:6236‑M2/146‑1 (MQ=255)                                                                                                                                               aCCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATGCGAAAGATTTGc  <  4:70177‑M2/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    ACGGCGTAGACCATGTCGGTGTAATGCTTGACCACGGCTTTGCCGGCTGCTTCGTCGACAGCCCCTGGCGCAGCGGTGGTGGCAGCAGCAGGTGCC‑‑TGGGCTTGCGGCGCGGCGGCTTTTTCGTCCTTGCCTTCACCGCAACCGGCGAGGGCGATGGCAATGGCCAGCAGACTGGCGGAGGCCAGAGGCATTCGAATCATTATTGGTTTTCCTGCATCGTGTGGTTGGACCAAAGGGGTGGACCGTGCGCCGTGGCACGCAAAACTACAACATCATGCGAAAGATTTGC  >  NC_002947/1055632‑1055920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.