New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1748247	43 (0.760)	3 (0.060)	3/242	NT	6.7%	coding (421/438 nt)	PP_1548	hypothetical protein
	?	NC_002947	= 1748274	43 (0.820)					coding (394/438 nt)	PP_1548	hypothetical protein

CAACGAATGCGGCGTAGCGGGTGTCGCGCTCGGTCTGGTGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTC  >  NC_002947/1748101‑1748388                                                                                                                                                   |                                                                                                                                              cAACGAATGCGGCGTAGCGGGTGTAGCGCTCGGTCTGGTGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTtgaggc                                                                                                                                             >  2:23791/1‑149 (MQ=255)     gAATGCGGCGTAGCGGGTGTCGCGCTCGGTCTGGTGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTtgaggctgag                                                                                                                                         >  4:254706/1‑149 (MQ=255)      aaTGCGGCGTAGCGGGTGTCGCGCTCGGTCTGGTGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTtgaggctgagg                                                                                                                                        <  8:130089/149‑1 (MQ=255)        tGCGGCGTAGCGGGTGTCGCGCTCGGTCTACTGGCCGTACCAGGCCCATGTCCCGTAGACGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACACATAGTCCTTGAGGCTGAGGcc                                                                                                                                      >  4:154200/1‑149 (MQ=255)           ggcgTAGCGGGTGTCGCTCTCGGTCTGGTGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCAt                                                                                                                                   <  3:136744/149‑1 (MQ=255)                     gtgtCGCGCTCGGTCTGGTGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGcc                                                                                                                         <  7:324241/149‑1 (MQ=255)                                  tCTGGTGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGaagtcggcgaagctgatgggcctcagcctcaagga                                                                                                            <  5:189132‑M1/149‑36 (MQ=255)                                       tggCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGaagtcggcgaagctgatgggcctcagcctcaaggactatc                                                                                                       <  2:15283‑M1/149‑41 (MQ=255)                                       tggCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGc                                                                                                        >  3:142420/1‑148 (MQ=255)                                          ccGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGaagtcggcgaagctgatgggcctcagcctcaaggactatctgt                                                                                                    <  1:292148‑M1/149‑44 (MQ=255)                                           cGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCAtt                                                                                                    >  4:70724/1‑148 (MQ=255)                                           cGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCActt                                                                                                   >  3:157436/1‑149 (MQ=255)                                               ccAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCtt                                                                                               >  4:219072/1‑149 (MQ=255)                                               ccAGGCGCATGTCCCATAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCt                                                                                                <  6:368687/148‑1 (MQ=255)                                                   gcgcATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACTCGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCtt                                                                                                                             <  1:79519/115‑1 (MQ=255)                                                   gcgcATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCtt                                                                                                                             >  2:79519/1‑115 (MQ=255)                                                     gcATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTtcgtc                                                                                         <  3:70724/149‑1 (MQ=255)                                                       aTGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGa                                                                                       >  8:252956/1‑149 (MQ=255)                                                       aTGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACACATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGa                                                                                       <  3:154200/149‑1 (MQ=255)                                                        tGTCCTGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGAt                                                                                      <  3:242632/149‑1 (MQ=255)                                                         gTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaa                                                                                                               <  7:138898‑M2/123‑6 (MQ=255)                                                         gTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaa                                                                                                               >  8:138898‑M2/1‑118 (MQ=255)                                                              gTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGcc                                                                                >  1:292864/1‑149 (MQ=255)                                                                 gTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCg                                                                              <  7:127050/148‑1 (MQ=255)                                                                  tCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAg                                                                            <  1:23791/149‑1 (MQ=255)                                                                  tCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAg                                                                            <  4:142420/149‑1 (MQ=255)                                                                    gATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAgg                                                                           <  5:144987/148‑1 (MQ=255)                                                                         cgcgCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCACTTCCTTTTCGTCGATGTCGCCCGAGGCCTCgg                                                                     <  4:157436/149‑1 (MQ=255)                                                                            gcATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCGTTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGa                                                                  <  3:254706/149‑1 (MQ=255)                                                                              aTGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATg                                                                >  6:273941/1‑149 (MQ=255)                                                                              aTGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATg                                                                <  5:273941/149‑1 (MQ=255)                                                                                   cagccaCACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCCACTTCTCAAGGACGGCAATTTCCTTATCGTCGATGTCGCCCGATGCCTCGTCGATGGTCAg                                                           >  4:61299/1‑149 (MQ=255)                                                                                    agccaCACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTtcgtc                                                                                         >  7:125457/1‑118 (MQ=255)                                                                                    agccaCACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTtcgtc                                                                                         <  8:125457/118‑1 (MQ=255)                                                                                      ccaCACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCAt                                                        >  4:4320/1‑149 (MQ=255)                                                                                       cacaCGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCAt                                                        >  2:182549/1‑148 (MQ=255)                                                                                          acgacgGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACg                                                    >  3:17742/1‑149 (MQ=255)                                                                                                 cggcgACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGc                                                          >  5:2615/1‑136 (MQ=255)                                                                                                 cggcgACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGc                                                          <  6:2615/136‑1 (MQ=255)                                                                                                  ggcgACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAAc                                            <  7:252956/149‑1 (MQ=255)                                                                                                     gACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGCCGTTGATAACGAt                                         >  3:257843/1‑149 (MQ=255)                                                                                                             tCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAAc                                            >  2:343891/1‑138 (MQ=255)                                                                                                             tCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAAc                                            <  1:343891/138‑1 (MQ=255)                                                                                                              cccGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGcttc                                <  3:4320/149‑1 (MQ=255)                                                                                                                cGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGcttctt                              <  2:292864/149‑1 (MQ=255)                                                                                                                 gAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGAAGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGACTCGGCGATGGTCATCATGACCTTCATAACGAAGGCCGcttctt                              >  8:139251/1‑148 (MQ=255)                                                                                                                     gATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGc                         <  1:182549/149‑1 (MQ=255)                                                                                                                                    acaGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaaggactatctgtgatccgtatcgcatccttcgggatcatggtcgccgccgtcgtgtggctggccatgcgcggcatcgactacgggacatgcgcctggtacgg          <  1:292148‑M2/149‑107 (MQ=255)                                                                                                                                      aGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCttt        <  3:219072/149‑1 (MQ=255)                                                                                                                                       gATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaaggactatctgtgatccgtatcgcatccttcgggatcatggtcgccgccgtcgtgtggctggccatgcgcggcatcgactacgggacatgcgcctggtacggcca       <  2:15283‑M2/149‑110 (MQ=255)                                                                                                                                        aTAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCAAGGTCTTTCa      <  7:139251/149‑1 (MQ=255)                                                                                                                                            tCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaaggactatctgtgatccgtatcgcatccttcgggatcatggtcgccgccgtcgtgtggctggccatgcgcggcatcgactacgggacatgcgcctggtacggccaccaga  <  5:189132‑M2/149‑115 (MQ=255)                                                                                                                                               ttGAGaagtcggcgaagctgatgggcctcagcctcaaggactatctgtgatccgtatcgcatccttcgggatcatggtcgccgccgtcgtgtggctggccatgcgcggcatcgactacgggac                         >  8:138898‑M1/1‑5 (MQ=255)                                                                                                                                               ttGAGaagtcggcgaagctgatgggcctcagcctcaaggactatctgtgatccgtatcgcatccttcgggatcatggtcgccgccgtcgtgtggctggccatgcgcggcatcgactacgggac                         <  7:138898‑M1/123‑119 (MQ=255)                                                                                                                                               ttGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGcttct                               <  2:126562/117‑1 (MQ=255)                                                                                                                                               ttGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGcttct                               >  1:126562/1‑117 (MQ=255)                                                                                                                                                   |                                                                                                                                              CAACGAATGCGGCGTAGCGGGTGTCGCGCTCGGTCTGGTGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTC  >  NC_002947/1748101‑1748388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.