New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1748247	43 (0.760)	3 (0.060)	3/242	NT	6.7%	coding (421/438 nt)	PP_1548	hypothetical protein
	?	NC_002947	= 1748274	43 (0.820)					coding (394/438 nt)	PP_1548	hypothetical protein

TGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTCCTTCTCGGCGTTCATGCGCAGGATGCGGTGGCC  >  NC_002947/1748139‑1748421                                                                                                                                        |                                                                                                                                                    tggCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGc                                                                                                                                         >  3:142420/1‑148 (MQ=255)     cGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCAtt                                                                                                                                     >  4:70724/1‑148 (MQ=255)     cGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCActt                                                                                                                                    >  3:157436/1‑149 (MQ=255)         ccAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCtt                                                                                                                                >  4:219072/1‑149 (MQ=255)         ccAGGCGCATGTCCCATAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCt                                                                                                                                 <  6:368687/148‑1 (MQ=255)               gcATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTtcgtc                                                                                                                          <  3:70724/149‑1 (MQ=255)                 aTGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGa                                                                                                                        >  8:252956/1‑149 (MQ=255)                 aTGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACACATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGa                                                                                                                        <  3:154200/149‑1 (MQ=255)                  tGTCCTGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGAt                                                                                                                       <  3:242632/149‑1 (MQ=255)                   gTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaa                                                                                                                                                <  7:138898‑M2/123‑6 (MQ=255)                   gTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaa                                                                                                                                                >  8:138898‑M2/1‑118 (MQ=255)                        gTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGcc                                                                                                                 >  1:292864/1‑149 (MQ=255)                           gTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCg                                                                                                               <  7:127050/148‑1 (MQ=255)                            tCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAg                                                                                                             <  1:23791/149‑1 (MQ=255)                            tCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAg                                                                                                             <  4:142420/149‑1 (MQ=255)                              gATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAgg                                                                                                            <  5:144987/148‑1 (MQ=255)                                   cgcgCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCACTTCCTTTTCGTCGATGTCGCCCGAGGCCTCgg                                                                                                      <  4:157436/149‑1 (MQ=255)                                      gcATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCGTTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGa                                                                                                   <  3:254706/149‑1 (MQ=255)                                        aTGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATg                                                                                                 >  6:273941/1‑149 (MQ=255)                                        aTGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATg                                                                                                 <  5:273941/149‑1 (MQ=255)                                             cagccaCACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCCACTTCTCAAGGACGGCAATTTCCTTATCGTCGATGTCGCCCGATGCCTCGTCGATGGTCAg                                                                                            >  4:61299/1‑149 (MQ=255)                                              agccaCACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTtcgtc                                                                                                                          >  7:125457/1‑118 (MQ=255)                                              agccaCACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTtcgtc                                                                                                                          <  8:125457/118‑1 (MQ=255)                                                ccaCACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCAt                                                                                         >  4:4320/1‑149 (MQ=255)                                                 cacaCGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCAt                                                                                         >  2:182549/1‑148 (MQ=255)                                                    acgacgGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACg                                                                                     >  3:17742/1‑149 (MQ=255)                                                           cggcgACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGc                                                                                           >  5:2615/1‑136 (MQ=255)                                                           cggcgACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGc                                                                                           <  6:2615/136‑1 (MQ=255)                                                            ggcgACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAAc                                                                             <  7:252956/149‑1 (MQ=255)                                                               gACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGCCGTTGATAACGAt                                                                          >  3:257843/1‑149 (MQ=255)                                                                       tCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAAc                                                                             <  1:343891/138‑1 (MQ=255)                                                                       tCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAAc                                                                             >  2:343891/1‑138 (MQ=255)                                                                        cccGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGcttc                                                                 <  3:4320/149‑1 (MQ=255)                                                                          cGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGcttctt                                                               <  2:292864/149‑1 (MQ=255)                                                                           gAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGAAGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGACTCGGCGATGGTCATCATGACCTTCATAACGAAGGCCGcttctt                                                               >  8:139251/1‑148 (MQ=255)                                                                               gATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGc                                                          <  1:182549/149‑1 (MQ=255)                                                                                              acaGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaaggactatctgtgatccgtatcgcatccttcgggatcatggtcgccgccgtcgtgtggctggccatgcgcggcatcgactacgggacatgcgcctggtacgg                                           <  1:292148‑M2/149‑107 (MQ=255)                                                                                                aGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCttt                                         <  3:219072/149‑1 (MQ=255)                                                                                                 gATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaaggactatctgtgatccgtatcgcatccttcgggatcatggtcgccgccgtcgtgtggctggccatgcgcggcatcgactacgggacatgcgcctggtacggcca                                        <  2:15283‑M2/149‑110 (MQ=255)                                                                                                  aTAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCAAGGTCTTTCa                                       <  7:139251/149‑1 (MQ=255)                                                                                                      tCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTctcaaggactatctgtgatccgtatcgcatccttcgggatcatggtcgccgccgtcgtgtggctggccatgcgcggcatcgactacgggacatgcgcctggtacggccaccaga                                   <  5:189132‑M2/149‑115 (MQ=255)                                                                                                         ttGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGcttct                                                                <  2:126562/117‑1 (MQ=255)                                                                                                         ttGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGcttct                                                                >  1:126562/1‑117 (MQ=255)                                                                                                              gctgaggcCCATCAGCTTAGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACCATAGCCGcatctt                                                               >  6:141287/1‑113 (MQ=255)                                                                                                                  aggcCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGACttt                                         >  6:274508/1‑131 (MQ=255)                                                                                                                    gcCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTCCTTCTCg                            <  6:143411/142‑1 (MQ=255)                                                                                                                    gcCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTCCTTCTCg                            >  5:143411/1‑142 (MQ=255)                                                                                                                     cccATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTCCTTCTCGGCGNTCAt                    <  5:119722/149‑1 (MQ=255)                                                                                                                         tCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTCCTTCTCGGCGTTCATgcg                 >  7:253011/1‑148 (MQ=255)                                                                                                                                     aCTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTCCTTCTCGGCGTTCATGCGCAGGATGCGGTgg    >  6:285627/1‑149 (MQ=255)                                                                                                                                       ttCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTCCTTCTCGGCGTTCATGCGCAGGATGCGGTGgcc  >  3:237035/1‑149 (MQ=255)                                                                                                                                        |                                                                                                                                                    TGGCCGTACCAGGCGCATGTCCCGTAGTCGATGCCGCGCATGGCCAGCCACACGACGGCGGCGACCATGATCCCGAAGGATGCGATACGGATCACAGATAGTCCTTGAGGCTGAGGCCCATCAGCTTCGCCGACTTCTCAAGGACGGCCATTTCCTTTTCGTCGATGTCGCCCGAGGCCTCGGCGATGGTCAGCATGACGTTGATAACGATGGCCGCTTCTTCAGGCGAGTGCGCCAGGTCTTTCAGTTCCTTCTCGGCGTTCATGCGCAGGATGCGGTGGCC  >  NC_002947/1748139‑1748421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.