New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2194395 =	49 (0.860)	5 (0.090)	5/256	NT	9.0%	coding (1270/2151 nt)	PP_1940	methyl‑accepting chemotaxis transducer
	?	NC_002947	2194436 =	53 (0.950)					coding (1229/2151 nt)	PP_1940	methyl‑accepting chemotaxis transducer

CTTGACGAGATTGCTCCTCCATCCCGTTACTGGTTTGACGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAACACTACGTGCCATCATCCATATAAATAGCAG  >  NC_002947/2194248‑2194536                                                                                                                                                    |                                                                                                                                              cTTGACGAGATTGCTCCTCCATCCCGTTACTGGTTTGACGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGccacc                                                                                                                                              <  6:189561/149‑1 (MQ=255)          aTTGCTCCTCCATCCCGTTACTGGTTTGACGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGcc                                                                                                                                      >  3:97382/1‑148 (MQ=255)               tcctccATCCCGTTACTGGTTTGACGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACt                                                                                                                                 >  6:235561/1‑148 (MQ=255)               tcctccATCCCGTTACTGGTTTGACGAGCAATCGCTGACGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACt                                                                                                                                 >  1:191194/1‑148 (MQ=255)                 ctccATCCCGTTACTGGTTTGACGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCaa                                                                                                                                            >  8:254438/1‑135 (MQ=255)                 ctccATCCCGTTACTGGTTTGACGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCaa                                                                                                                                            <  7:254438/135‑1 (MQ=255)                 ctccATCCCGTTACTGGTTTGACGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCa                                                                                                                               >  1:269208/1‑148 (MQ=255)                  tccATCCCGTTACTGGTTTGACGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATc                                                                                                                             >  1:351790/1‑149 (MQ=255)                             ttagccgcaatcgttggcctgctatttatatggatgatggcacgtagtgttactaagccaattcttcgcgttgcatatatgctgagagacatcgctagtggcgacggcaatctgaccctCCAACTCGCCCAACTCATCTTGTTTCTCa                                                                                                                   <  6:320868‑M1/29‑1 (MQ=255)                                       cGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCg                                                                                                        >  5:102572/1‑149 (MQ=255)                                         gttggcctgctatttatatggatgatggcacgtagtgttactaagccaattcttcgcgttgcatatatgctgagagacatcgctagtggcgacggcaatctgaccctCCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGa                                                                                                      >  5:320868‑M1/108‑149 (MQ=255)                                         aGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGa                                                                                                      <  5:235561/149‑1 (MQ=255)                                          gCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAg                                                                                                     >  1:69913/1‑149 (MQ=255)                                            ggcctgctatttatatggatgatggcacgtagtgttactaagccaattcttcgcgttgcatatatgctgagagacatcgctagtggcgacggcaatctgaccctCCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAgg                                                                                                    >  4:162859‑M1/105‑148 (MQ=255)                                             aTCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGt                                                                                                  >  2:314067/1‑149 (MQ=255)                                                tgctatttatatggatgatggcacgtagtgttactaagccaattcttcgcgttgcatatatgctgagagacatcgctagtggcgacggcaatctgaccctCCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAg                                                                                                     <  6:250530‑M1/43‑1 (MQ=255)                                                tgctatttatatggatgatggcacgtagtgttactaagccaattcttcgcgttgcatatatgctgagagacatcgctagtggcgacggcaatctgaccctCCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAg                                                                                                     >  5:250530‑M1/101‑143 (MQ=255)                                                 cTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGt                                                                                                  >  8:238373/1‑145 (MQ=255)                                                 cTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGa                                                                                              <  2:269208/149‑1 (MQ=255)                                                     cGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGAtt                                                                                            >  1:63489/1‑147 (MQ=255)                                                     cGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGAtt                                                                                            <  2:63489/147‑1 (MQ=255)                                                         tCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTc                                                                                      >  1:149424/1‑149 (MQ=255)                                                           gTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGc                                                                                    <  2:69913/149‑1 (MQ=255)                                                            tCCGCCGTAGCTAGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGc                                                                                    >  8:177392/1‑148 (MQ=255)                                                              cgccgTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCAc                                                                                 >  2:242998/1‑149 (MQ=255)                                                                ccgTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTa                                                                               <  2:191194/149‑1 (MQ=255)                                                                ccgTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTa                                                                               <  6:102572/149‑1 (MQ=255)                                                                 cgTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAgg                                                                                                    >  8:217693/1‑127 (MQ=255)                                                                 cgTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAgg                                                                                                    <  7:217693/127‑1 (MQ=255)                                                                     gCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACGATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGAt                                                                          <  7:177392/149‑1 (MQ=255)                                                                               ccTGGACTGAGCGTTTTACATCGGCGATACTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATATTTTTTATCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACAAGCGATGTCTCTCAg                                                                 >  5:123654/1‑148 (MQ=255)                                                                                   gACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCatat                                                            <  7:238373/149‑1 (MQ=255)                                                                                   gACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCatat                                                            <  2:149424/149‑1 (MQ=255)                                                                                     cTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCatatat                                                          <  1:242998/149‑1 (MQ=255)                                                                                      tGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCatatat                                                          >  3:257440/1‑148 (MQ=255)                                                                                         gCGGTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCaa                                                      <  7:151807/149‑1 (MQ=255)                                                                                             tttACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGccc                                                                                                                                     >  5:54760/1‑66 (MQ=255)                                                                                             tttACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGccc                                                                                                                                     <  6:54760/66‑1 (MQ=255)                                                                                                aCCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAAcgcg                                                  >  3:209478/1‑146 (MQ=255)                                                                                                 ccTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCatatat                                                          >  2:150084/1‑137 (MQ=255)                                                                                                 ccTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCatatat                                                          <  1:150084/137‑1 (MQ=255)                                                                                                    cGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATc                                                                                                                             <  1:149910/67‑1 (MQ=255)                                                                                                    cGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATc                                                                                                                             >  2:149910/1‑67 (MQ=255)                                                                                                        gATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTAATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCt                                       >  3:69964/1‑149 (MQ=255)                                                                                                         aTAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCga                                                 <  5:117906/138‑1 (MQ=255)                                                                                                         aTAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCga                                                 >  6:117906/1‑138 (MQ=255)                                                                                                                gCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTAATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAac                                >  4:302135/1‑148 (MQ=255)                                                                                                                 cTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAacac                              >  7:173448/1‑149 (MQ=255)                                                                                                                  tGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATTCAACGCGAAGAATTCGCTAAGTAacac                              >  8:324302/1‑148 (MQ=255)                                                                                                                   gTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTATCATAGGCGAGTAGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAACACTa                            >  1:57697/1‑149 (MQ=255)                                                                                                                            cAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAAAACTACGTGCcat                    >  8:88083/1‑148 (MQ=255)                                                                                                                                gagggagTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAACACTACGTGCCATCATcc               <  4:97382/149‑1 (MQ=255)                                                                                                                                     agTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAACACTACGTGCCATCATCCAtata          <  2:351790/149‑1 (MQ=255)                                                                                                                                          aaCCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAACACTACGTGCCATCATCCATATaaa        >  8:77057/1‑146 (MQ=255)                                                                                                                                            ccATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAACACTACGTGCCATCATCCATATAAATAGCa   <  4:209478/149‑1 (MQ=255)                                                                                                                                            ccATGCCACCAACTCGCCCAACTCATCTTGTTTCTAATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAACACTACGTGCCATCATCCATATAAATAGCa   <  3:302135/149‑1 (MQ=255)                                                                                                                                             cATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTAGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAACACTACGTGCCATCATCCATATAAATAGCAg  >  2:216802/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                              CTTGACGAGATTGCTCCTCCATCCCGTTACTGGTTTGACGAGCAATCGCTGCCGACTCGTCCGCCGTAGCTCGGGCAGCCTGGACTGAGCGTTTTACCTCGGCGATAGTAGGCTGTAGTTTATCAAGGAGGGAGTTGAACCATGCCACCAACTCGCCCAACTCATCTTGTTTCTCATAGGCGAGTCGGAGGGTCAGATTGCCGTCGCCACTAGCGATGTCTCTCAGCATATATGCAACGCGAAGAATTGGCTTAGTAACACTACGTGCCATCATCCATATAAATAGCAG  >  NC_002947/2194248‑2194536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.