New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2211507 =	45 (0.790)	4 (0.070)	4/250	NT	8.7%	coding (898/1167 nt)	PP_1954	hypothetical protein
	?	NC_002947	2211544 =	41 (0.750)					coding (935/1167 nt)	PP_1954	hypothetical protein

CATGACATCGGCCCAGGATGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTT  >  NC_002947/2211362‑2211654                                                                                                                                                  |                                                                                                                                                      cATGACATCGGCCCAGGATGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGc                                                                                                                                                    >  6:5937/1‑149 (MQ=255) acaaaagtaatttgcgactcagggtcgacccagaaaagagtggaaccagcaccaaagttgccaaatgtgccaggtgaagtgagcgtgccgaactgcgacacggtgaggccgtccccaccaagcgcaaagccgagccccatgttgcCTGc                                                                                                                                                    <  3:160997‑M1/4‑1 (MQ=255) acaaaagtaatttgcgactcagggtcgacccagaaaagagtggaaccagcaccaaagttgccaaatgtgccaggtgaagtgagcgtgccgaactgcgacacggtgaggccgtccccaccaagcgcaaagccgagccccatgttgcCTGc                                                                                                                                                    <  2:260798‑M1/4‑1 (MQ=255)   tGACATCGGCCCAGGATGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTa                                                                                                                                                  <  2:165379/149‑1 (MQ=255)      cATCGGCCCAGGATGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCt                                                                                                                                               <  4:131113/149‑1 (MQ=255)        tCGGCCCAGGATGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGa                                                                                                                                             >  7:46498/1‑149 (MQ=255)        tCGGCCCAGGATGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGa                                                                                                                                             >  7:51667/1‑149 (MQ=255)            ttgcgactcagggtcgacccagaaaagagtggaaccagcaccaaagttgccaaatgtgccaggtgaagtgagcgtgccgaactgcgacacggtgaggccgtccccaccaagcgcaaagccgagccccatgttgcCTGCTAGCTGATGcc                                                                                                                                         <  3:136639‑M1/15‑1 (MQ=255)                ggATGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGc                                                                                                                                      >  4:121491/1‑148 (MQ=255)                 gATGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCa                                                                                                                                    >  7:615/1‑149 (MQ=255)                   tGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCAtt                                                                                                                                  >  2:262553/1‑149 (MQ=255)                     tATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGGACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTgg                                                                                                                                >  2:353690/1‑149 (MQ=255)                     tATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTgg                                                                                                                                >  4:160997/1‑149 (MQ=255)                      aTTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTgg                                                                                                                                >  4:94496/1‑148 (MQ=255)                          gTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTa                                                                                                                                                  >  8:3932/1‑126 (MQ=255)                          gTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTa                                                                                                                                                  <  7:3932/126‑1 (MQ=255)                              ttGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGc                                                                                                                         >  5:158649/1‑147 (MQ=255)                                  cGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCcagcag                                                                                                                   >  2:82576/1‑149 (MQ=255)                                  cGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCcagcag                                                                                                                   <  8:46498/149‑1 (MQ=255)                                  cGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCcagcag                                                                                                                   <  8:51667/149‑1 (MQ=255)                                           gaaccagcaccaaagttgccaaatgtgccaggtgaagtgagcgtgccgaactgcgacacggtgaggccgtccccaccaagcgcaaagccgagccccatgttgcCTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑g                                                                                                          >  4:136639‑M1/104‑148 (MQ=255)                                            cGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑gg                                                                                                         <  3:333216/148‑1 (MQ=255)                                                 gCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCg                                                                                                  >  5:310118/1‑149 (MQ=255)                                                    gggAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCt                                                                                               >  7:189154/1‑149 (MQ=255)                                                     ggAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCtt                                                                                              >  5:167215/1‑149 (MQ=255)                                                          aGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTgcgc                                                                                         <  6:310118/149‑1 (MQ=255)                                                          aGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTgcgc                                                                                         >  5:60953/1‑149 (MQ=255)                                                           gTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCt                                                                                        >  2:271119/1‑149 (MQ=255)                                                              cGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTtg                                                                                      <  1:353690/148‑1 (MQ=255)                                                               gTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTtggt                                                                                    <  5:233709/149‑1 (MQ=255)                                                                     aGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGAc                                                                              <  5:5937/149‑1 (MQ=255)                                                                      gcgcATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTtggt                                                                                    >  1:339049/1‑142 (MQ=255)                                                                      gcgcATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTtggt                                                                                    <  2:339049/142‑1 (MQ=255)                                                                       cgcATTCTGTCACCAGCCGTAGTGCGCAAACCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACATGGGGG‑CTCGGCTTTGCGCTTGGTGGGGACg                                                                             >  1:33351/1‑149 (MQ=255)                                                                           ttCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCAAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTc                                                                        <  1:262553/149‑1 (MQ=255)                                                                            gaagtgagcgtgccgaactgcgacacggtgaggccgtccccaccaagcgcaaagccgagccccatgttgcCTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCa                                                                                                                <  8:235061‑M1/40‑1 (MQ=255)                                                                            gaagtgagcgtgccgaactgcgacacggtgaggccgtccccaccaagcgcaaagccgagccccatgttgcCTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCa                                                                                                                >  7:235061‑M1/71‑110 (MQ=255)                                                                              tGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCAcc                                                                     >  5:69682/1‑149 (MQ=255)                                                                                  gCCAGCCGTAGTGCGCAAAGCTTCGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCTTTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGGTTTGCGCTTGGTGGGGACGGCCTCACCgtg                                                                  <  2:123823/148‑1 (MQ=255)                                                                                  gCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCgtg                                                                  <  6:36923/148‑1 (MQ=255)                                                                                  gCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGAGGCCGTCCCCAccaagc                                                                 <  3:94496/149‑5 (MQ=255)                                                                                          tAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTc                                                         <  1:271119/149‑1 (MQ=255)                                                                                                gcAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACg                                                   <  4:354383/149‑1 (MQ=255)                                                                                                 cAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGc                                                  >  2:29551/1‑149 (MQ=255)                                                                                                                  aGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GCGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGcaca                                 >  2:171522/1‑149 (MQ=255)                                                                                                                      gggCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTg                             <  6:158649/149‑1 (MQ=255)                                                                                                                       ggCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTgg                            >  2:292429/1‑149 (MQ=255)                                                                                                                         cGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGc                           >  6:368533/1‑148 (MQ=255)                                                                                                                               aaTAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTg                    <  6:167215/149‑1 (MQ=255)                                                                                                                                    aCGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTAGCGCTTGGTGGGGACGGCATCTCCGTGTCGCAGTTAGGCACGCTCACTTACCCTGGCACATTTGGCAACTTTGGTGCt               >  8:217009/1‑149 (MQ=255)                                                                                                                                      gACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTgg             <  1:82576/149‑1 (MQ=255)                                                                                                                                      gACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAAAAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCGCACTTCACCTGGCACATTTGGCAACTTTGGTGCTgg             <  8:189154/149‑1 (MQ=255)                                                                                                                                                  CTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGGGCTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCttt  >  2:33351‑M1/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CATGACATCGGCCCAGGATGTATTCGTCTTTGCCGAGATGCTGCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTT  >  NC_002947/2211362‑2211654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.