New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2211507 =	45 (0.790)	4 (0.070)	4/250	NT	8.7%	coding (898/1167 nt)	PP_1954	hypothetical protein
	?	NC_002947	2211544 =	41 (0.750)					coding (935/1167 nt)	PP_1954	hypothetical protein

GCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGCAAATTACTTTTGTGTG  >  NC_002947/2211404‑2211691                                                                                                                                             |                                                                                                                                                      gaaccagcaccaaagttgccaaatgtgccaggtgaagtgagcgtgccgaactgcgacacggtgaggccgtccccaccaagcgcaaagccgagccccatgttgcCTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑g                                                                                                                                               >  4:136639‑M1/104‑148 (MQ=255)  cGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑gg                                                                                                                                              <  3:333216/148‑1 (MQ=255)       gCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCg                                                                                                                                       >  5:310118/1‑149 (MQ=255)          gggAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCt                                                                                                                                    >  7:189154/1‑149 (MQ=255)           ggAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCtt                                                                                                                                   >  5:167215/1‑149 (MQ=255)                aGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTgcgc                                                                                                                              >  5:60953/1‑149 (MQ=255)                aGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTgcgc                                                                                                                              <  6:310118/149‑1 (MQ=255)                 gTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCt                                                                                                                             >  2:271119/1‑149 (MQ=255)                    cGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTtg                                                                                                                           <  1:353690/148‑1 (MQ=255)                     gTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTtggt                                                                                                                         <  5:233709/149‑1 (MQ=255)                           aGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGAc                                                                                                                   <  5:5937/149‑1 (MQ=255)                            gcgcATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTtggt                                                                                                                         >  1:339049/1‑142 (MQ=255)                            gcgcATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTtggt                                                                                                                         <  2:339049/142‑1 (MQ=255)                             cgcATTCTGTCACCAGCCGTAGTGCGCAAACCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACATGGGGG‑CTCGGCTTTGCGCTTGGTGGGGACg                                                                                                                  >  1:33351/1‑149 (MQ=255)                                 ttCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCAAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTc                                                                                                             <  1:262553/149‑1 (MQ=255)                                  gaagtgagcgtgccgaactgcgacacggtgaggccgtccccaccaagcgcaaagccgagccccatgttgcCTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCa                                                                                                                                                     >  7:235061‑M1/71‑110 (MQ=255)                                  gaagtgagcgtgccgaactgcgacacggtgaggccgtccccaccaagcgcaaagccgagccccatgttgcCTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCa                                                                                                                                                     <  8:235061‑M1/40‑1 (MQ=255)                                    tGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCAcc                                                                                                          >  5:69682/1‑149 (MQ=255)                                        gCCAGCCGTAGTGCGCAAAGCTTCGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCTTTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGGTTTGCGCTTGGTGGGGACGGCCTCACCgtg                                                                                                       <  2:123823/148‑1 (MQ=255)                                        gCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCgtg                                                                                                       <  6:36923/148‑1 (MQ=255)                                        gCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGAGGCCGTCCCCAccaagc                                                                                                      <  3:94496/149‑5 (MQ=255)                                                tAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTc                                                                                              <  1:271119/149‑1 (MQ=255)                                                      gcAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACg                                                                                        <  4:354383/149‑1 (MQ=255)                                                       cAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGc                                                                                       >  2:29551/1‑149 (MQ=255)                                                                        aGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GCGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGcaca                                                                      >  2:171522/1‑149 (MQ=255)                                                                            gggCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTg                                                                  <  6:158649/149‑1 (MQ=255)                                                                             ggCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTgg                                                                 >  2:292429/1‑149 (MQ=255)                                                                               cGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGc                                                                >  6:368533/1‑148 (MQ=255)                                                                                     aaTAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTg                                                         <  6:167215/149‑1 (MQ=255)                                                                                          aCGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTAGCGCTTGGTGGGGACGGCATCTCCGTGTCGCAGTTAGGCACGCTCACTTACCCTGGCACATTTGGCAACTTTGGTGCt                                                    >  8:217009/1‑149 (MQ=255)                                                                                            gACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTgg                                                  <  1:82576/149‑1 (MQ=255)                                                                                            gACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAAAAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCGCACTTCACCTGGCACATTTGGCAACTTTGGTGCTgg                                                  <  8:189154/149‑1 (MQ=255)                                                                                                catgttgcctgctggcagatcccaatggcgggcatcagctagcagGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTc                                               >  4:136639‑M2/46‑148 (MQ=255)                                                                                                     tgcctgctggcagatcccaatggcgggcatcagctagcagGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTc                                                                                >  7:235061‑M2/41‑110 (MQ=255)                                                                                                     tgcctgctggcagatcccaatggcgggcatcagctagcagGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTc                                                                                <  8:235061‑M2/70‑1 (MQ=255)                                                                                                        CTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGGGCTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCttt                                       >  2:33351‑M1/1‑149 (MQ=255)                                                                                                           CTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACtt                                                                                 <  4:39124‑M1/103‑1 (MQ=255)                                                                                                           CTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACtt                                                                                 >  3:39124‑M1/1‑103 (MQ=255)                                                                                                           CTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCAAGCTCACTTCACCTGGCACATTTGGCAAGTTTGGTGCTGGTTCCACTCTTTTCt                                    >  1:171522‑M1/1‑148 (MQ=255)                                                                                                            TAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTgg                                  <  8:318395‑M1/149‑1 (MQ=255)                                                                                                              gCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGt                                <  5:368533/149‑1 (MQ=255)                                                                                                              gCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGt                                <  7:318395/149‑1 (MQ=255)                                                                                                                  aTGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTgg                                  <  4:286182/143‑1 (MQ=255)                                                                                                                  aTGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTgg                                  >  3:286182/1‑143 (MQ=255)                                                                                                                    gCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGAc                            >  6:306533/1‑147 (MQ=255)                                                                                                                    gCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGAc                            <  5:306533/147‑1 (MQ=255)                                                                                                                        gCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGCCGGCCTCACCGTGTCGCAGTTAGGCACGATCACTTCACCTGGCACATTTGGAAACTTTGGTGCTGGGTCCACTAGTTTCTGGGTCGccccggcg                      >  6:304574/1‑145 (MQ=255)                                                                                                                        gCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAg                      <  6:60953/149‑1 (MQ=255)                                                                                                                        gCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAg                      >  5:57371/1‑149 (MQ=255)                                                                                                                             tGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGc                  >  1:260798/1‑148 (MQ=255)                                                                                                                              ggcatcagctagcagGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGCaa                <  3:136639‑M2/134‑1 (MQ=255)                                                                                                                                gATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGCAAAt              <  3:121491/149‑1 (MQ=255)                                                                                                                                 aTCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGCAAAt              >  5:122248/1‑148 (MQ=255)                                                                                                                                      ccAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGCAAATTAc           <  5:304574/146‑1 (MQ=255)                                                                                                                                         gcagGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGCAAATTACTTTtgt     <  3:160997‑M2/145‑1 (MQ=255)                                                                                                                                         gcagGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGCAAATTACTTTtgt     <  2:260798‑M2/145‑1 (MQ=255)                                                                                                                                             gCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGCAAATTACTTTtgcggt  >  1:168120/1‑144 (MQ=255)                                                                                                                                             |                                                                                                                                                      GCGTGAGCAGGGAACAGTGCGTGATGAGCGCATTCTGTCGCCAGCCGTAGTGCGCAAAGCTACGACCTTACAGACGGGCGATGCAATAAACGACCTCTACAAACTGCTAGCTGATGCCCGCCATTGGGATCTGCCAGCAGGCAACAT‑GGGG‑CTCGGCTTTGCGCTTGGTGGGGACGGCCTCACCGTGTCGCAGTTCGGCACGCTCACTTCACCTGGCACATTTGGCAACTTTGGTGCTGGTTCCACTCTTTTCTGGGTCGACCCTGAGTCGCAAATTACTTTTGTGTG  >  NC_002947/2211404‑2211691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.