New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 274781344 (0.780)3 (0.060) 3/250 NT 6.6% coding (693/741 nt) PP_2403 chemotaxis protein CheY
?NC_002947 = 2747839 42 (0.770)coding (667/741 nt) PP_2403 chemotaxis protein CheY

TAGCGCTCGTAGGCCTGCAGGCCGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAGCA  >  NC_002947/2747665‑2747961
                                                                                                                                                    |                                                                                                                                                    
taGCGCTCGTAGGCCTGCAGGCCGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCC                                                                                                                                                      <  1:154130‑M1/149‑1 (MQ=255)
   cgcTCGTAGGCCTGCAGGCCGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCg                                                                                                                                                   <  3:276669/149‑1 (MQ=255)
              cTGCAGGCCGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGt                                                                                                                                        >  6:311988/1‑149 (MQ=255)
                 cAGGCCGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCt                                                                                                                                      <  6:190345/148‑1 (MQ=255)
                  aGGCCGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTg                                                                                                                                    <  6:180722/149‑1 (MQ=255)
                   ggCCGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGa                                                                                                                                   <  5:311988/149‑1 (MQ=255)
                    gCCGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGAt                                                                                                                                  >  6:187510/1‑149 (MQ=255)
                      cGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCtt                                                                                                                                     >  5:152860/1‑144 (MQ=255)
                      cGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCtt                                                                                                                                     <  6:152860/144‑1 (MQ=255)
                             cAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTggg                                                                                                                         >  8:118603‑M2/1‑146 (MQ=255)
                                aCCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTTATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTg                                                                                                                                    <  1:333680/135‑1 (MQ=255)
                                aCCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTAATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTg                                                                                                                                    >  2:333680/1‑135 (MQ=255)
                                  cATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCagctgcatcaagaccgtgcgcagcgagggctac                                                                                                                     >  4:34320‑M1/1‑115 (MQ=255)
                                  cATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCagctgcatcaagaccgtgcgcagcgagggctac                                                                                                                     <  3:34320‑M1/148‑34 (MQ=255)
                                  cATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTcgc                                                                                                                    >  1:159928/1‑149 (MQ=255)
                                   aTAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCagctgcatcaagaccgtgcgcagcgagggctacgt                                                                                                                   <  3:76196‑M1/149‑36 (MQ=255)
                                   aTAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTcgcg                                                                                                                   <  5:58465/149‑1 (MQ=255)
                                        ccAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCAt                                                                                                              >  8:186476/1‑149 (MQ=255)
                                             acCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCa                                                                                                         >  6:69017/1‑149 (MQ=255)
                                                         aagaagATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTg                                                                                              <  6:134759/148‑1 (MQ=255)
                                                           gaagaTCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGgcg                                                                                           >  7:121712/1‑149 (MQ=255)
                                                              gaTCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAg                                                                                        >  2:184727/1‑149 (MQ=255)
                                                               aTCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAgg                                                                                       >  4:160243/1‑149 (MQ=255)
                                                                       cAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGAc                                                                               >  1:287962/1‑149 (MQ=255)
                                                                            gcgAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACATGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGc                                                                           >  7:30484/1‑148 (MQ=255)
                                                                                    aGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATg                                                                  <  5:187510/149‑1 (MQ=255)
                                                                                          cgcgGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACATGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCg                                                             <  8:30484/148‑1 (MQ=255)
                                                                                           gcgGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGt                                                           <  2:159928/149‑1 (MQ=255)
                                                                                            cgGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTc                                                          >  1:268826/1‑149 (MQ=255)
                                                                                              gCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGTTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCaa                                                                         <  4:49761/132‑1 (MQ=255)
                                                                                              gCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGTTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCaa                                                                         >  3:49761/1‑132 (MQ=255)
                                                                                               ccATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGgcgc                                                                                                >  8:42274/1‑108 (MQ=255)
                                                                                               ccATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGgcgc                                                                                                <  7:42274/108‑1 (MQ=255)
                                                                                                     cATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTc                                                 >  5:50990/1‑149 (MQ=255)
                                                                                                      aTGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCg                                                >  2:9882/1‑149 (MQ=255)
                                                                                                             ggACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTcgc                                         >  4:55545/1‑149 (MQ=255)
                                                                                                                 tCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGcc                                     >  3:332216/1‑149 (MQ=255)
                                                                                                                   gAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGgcg                                                                                                 >  4:154791/1‑87 (MQ=255)
                                                                                                                   gAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCt                                   <  8:121712/149‑1 (MQ=255)
                                                                                                                     gCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTgg                                 <  6:50990/149‑1 (MQ=255)
                                                                                                                       aaTTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGt                               >  7:288246/1‑149 (MQ=255)
                                                                                                                         ttGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGt                               >  2:294502/1‑147 (MQ=255)
                                                                                                                            cACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAgg                           <  3:55545/148‑1 (MQ=255)
                                                                                                                            cACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAgg                           <  2:268826/148‑1 (MQ=255)
                                                                                                                                   aGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGt                          <  1:215114/142‑1 (MQ=255)
                                                                                                                                   aGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGt                          >  2:215114/1‑142 (MQ=255)
                                                                                                                                      gAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTg                >  7:208989/1‑149 (MQ=255)
                                                                                                                                         aaCACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTc             <  5:69017/149‑1 (MQ=255)
                                                                                                                                            acGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTgggctacgtgttttcgctgccggtgcaattgctcgagtccccctcatgaaatggccgcgcaccctggcctcgcgtctggcgctgatcttcttcaccggcctggtgttggcttat          <  3:76196‑M2/149‑115 (MQ=255)
                                                                                                                                              gTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTgggctacgtgttttcgctgccggtgcaattgctcgagtccccctcatgaaatggccgcgcaccctggcctcgcgtctggcgctgatcttcttcaccggcctggtgttggcttatg         >  4:34320‑M2/1‑33 (MQ=255)
                                                                                                                                              gTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTgggctacgtgttttcgctgccggtgcaattgctcgagtccccctcatgaaatggccgcgcaccctggcctcgcgtctggcgctgatcttcttcaccggcctggtgttggcttatg         <  3:34320‑M2/148‑116 (MQ=255)
                                                                                                                                               tAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCt       <  2:287962/149‑1 (MQ=255)
                                                                                                                                               tAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCt       <  4:332216/149‑1 (MQ=255)
                                                                                                                                                  cccagctgcatcaagaccgtgcgcagcgagggctacgtgttttcgctgccggtgcaattgctcgagtccccctcatgaaatggccgcgcaccctggcctcgcgtctggcgctgatcttcttcaccggcctggtgttggcttatggtctg    >  8:118603‑M1/1‑3 (MQ=255)
                                                                                                                                                   ccTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAg    >  5:126149/1‑148 (MQ=255)
                                                                                                                                                    cTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAGCa  <  1:184727/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TAGCGCTCGTAGGCCTGCAGGCCGAACGACAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAGCA  >  NC_002947/2747665‑2747961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.