New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 274781344 (0.780)3 (0.060) 3/250 NT 6.6% coding (693/741 nt) PP_2403 chemotaxis protein CheY
?NC_002947 = 2747839 42 (0.770)coding (667/741 nt) PP_2403 chemotaxis protein CheY

CAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAGCACCCGCTGCGGGTGGTCGAG  >  NC_002947/2747694‑2747980
                                                                                                                                                 |                                                                                                                                             
cAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTggg                                                                                                                                            >  8:118603‑M2/1‑146 (MQ=255)
     cATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTcgc                                                                                                                                       >  1:159928/1‑149 (MQ=255)
      aTAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTcgcg                                                                                                                                      <  5:58465/149‑1 (MQ=255)
           ccAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCAt                                                                                                                                 >  8:186476/1‑149 (MQ=255)
                acCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCa                                                                                                                            >  6:69017/1‑149 (MQ=255)
                            aagaagATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTg                                                                                                                 <  6:134759/148‑1 (MQ=255)
                              gaagaTCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGgcg                                                                                                              >  7:121712/1‑149 (MQ=255)
                                 gaTCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAg                                                                                                           >  2:184727/1‑149 (MQ=255)
                                  aTCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAgg                                                                                                          >  4:160243/1‑149 (MQ=255)
                                          cAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGAc                                                                                                  >  1:287962/1‑149 (MQ=255)
                                               gcgAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACATGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGc                                                                                              >  7:30484/1‑148 (MQ=255)
                                                       aGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATg                                                                                     <  5:187510/149‑1 (MQ=255)
                                                             cgcgGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACATGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCg                                                                                <  8:30484/148‑1 (MQ=255)
                                                              gcgGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGt                                                                              <  2:159928/149‑1 (MQ=255)
                                                               cgGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTc                                                                             >  1:268826/1‑149 (MQ=255)
                                                                 gCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGTTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCaa                                                                                            <  4:49761/132‑1 (MQ=255)
                                                                 gCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGTTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCaa                                                                                            >  3:49761/1‑132 (MQ=255)
                                                                  ccATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGgcgc                                                                                                                   >  8:42274/1‑108 (MQ=255)
                                                                  ccATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGgcgc                                                                                                                   <  7:42274/108‑1 (MQ=255)
                                                                        cATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTc                                                                    >  5:50990/1‑149 (MQ=255)
                                                                         aTGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCg                                                                   >  2:9882/1‑149 (MQ=255)
                                                                                ggACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTcgc                                                            >  4:55545/1‑149 (MQ=255)
                                                                                    tCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGcc                                                        >  3:332216/1‑149 (MQ=255)
                                                                                      gAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGgcg                                                                                                                    >  4:154791/1‑87 (MQ=255)
                                                                                      gAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCt                                                      <  8:121712/149‑1 (MQ=255)
                                                                                        gCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTgg                                                    <  6:50990/149‑1 (MQ=255)
                                                                                          aaTTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGt                                                  >  7:288246/1‑149 (MQ=255)
                                                                                            ttGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGt                                                  >  2:294502/1‑147 (MQ=255)
                                                                                               cACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAgg                                              <  3:55545/148‑1 (MQ=255)
                                                                                               cACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAgg                                              <  2:268826/148‑1 (MQ=255)
                                                                                                      aGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGt                                             >  2:215114/1‑142 (MQ=255)
                                                                                                      aGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGt                                             <  1:215114/142‑1 (MQ=255)
                                                                                                         gAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTg                                   >  7:208989/1‑149 (MQ=255)
                                                                                                            aaCACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTc                                <  5:69017/149‑1 (MQ=255)
                                                                                                               acGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTgggctacgtgttttcgctgccggtgcaattgctcgagtccccctcatgaaatggccgcgcaccctggcctcgcgtctggcgctgatcttcttcaccggcctggtgttggcttat                             <  3:76196‑M2/149‑115 (MQ=255)
                                                                                                                 gTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTgggctacgtgttttcgctgccggtgcaattgctcgagtccccctcatgaaatggccgcgcaccctggcctcgcgtctggcgctgatcttcttcaccggcctggtgttggcttatg                            >  4:34320‑M2/1‑33 (MQ=255)
                                                                                                                 gTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTgggctacgtgttttcgctgccggtgcaattgctcgagtccccctcatgaaatggccgcgcaccctggcctcgcgtctggcgctgatcttcttcaccggcctggtgttggcttatg                            <  3:34320‑M2/148‑116 (MQ=255)
                                                                                                                  tAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCt                          <  4:332216/149‑1 (MQ=255)
                                                                                                                  tAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCt                          <  2:287962/149‑1 (MQ=255)
                                                                                                                      ccTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAg                       >  5:126149/1‑148 (MQ=255)
                                                                                                                       cTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAGCa                     <  1:184727/149‑1 (MQ=255)
                                                                                                                        tCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAg                                               >  4:241763/1‑122 (MQ=255)
                                                                                                                        tCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAg                                               <  3:241763/122‑1 (MQ=255)
                                                                                                                            tGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGCCCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAGCACCCg                 >  4:241279/1‑148 (MQ=255)
                                                                                                                                  cGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGtt                                            >  2:254799/1‑115 (MQ=255)
                                                                                                                                  cGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGtt                                            <  1:254799/115‑1 (MQ=255)
                                                                                                                                         gATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGTCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAGCACCCGCTGCGGGTGGTc     <  7:186476/147‑1 (MQ=255)
                                                                                                                                          aTGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAGCACCCGCTGCGGGTGGTCGAg  >  1:311413/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                             
CAGACCATAAGCCAACACCAGGCCGGTGAAGAAGATCAGCGCCAGACGCGAGGCCAGGGTGCGCGGCCATTTCATGAGGGGGACTCGAGCAATTGCACCGGCAGCGAAAACACGTAGCCCTCGCTGCGCACGGTCTTGATGCAGCTGGGCTCGCGGGCATCGTCACCCAGGCGCTGGCGCAGGCGGCTGACCAGCAAGTCGATGGAGCGGTCGAAGATGTCGGCTTCGCGGCCCTGGGTCAGGTTAAGCAGCTGTTCGCGGCTGAGCACCCGCTGCGGGTGGTCGAG  >  NC_002947/2747694‑2747980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.