New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3078702	43 (0.760)	3 (0.060)	3/246	NT	7.5%	coding (564/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	= 3078728	33 (0.620)					coding (538/1410 nt)	PP_2688	hypothetical protein

CATTTCCCGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGC  >  NC_002947/3078555‑3078849                                                                                                                                                    |                                                                                                                                                    cATTTCACGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCt                                                                                                                                                    >  3:180913/1‑149 (MQ=255)     tCCCGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTggg                                                                                                                                                 <  8:309112/148‑1 (MQ=255)        cGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGggcggc                                                                                                                                             <  5:39975/149‑1 (MQ=255)              aGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAg                                                                                                                                       >  2:282415/1‑149 (MQ=255)                  aGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCg                                                                                                                                   >  2:163574/1‑149 (MQ=255)                   ggCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCgg                                                                                                                                  <  7:310819/149‑1 (MQ=255)                      aTGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCgggg                                                                                                                                >  1:224321/1‑148 (MQ=255)                      aTGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCgggg                                                                                                                                >  5:292968/1‑148 (MQ=255)                          tCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCggg                                                                                                                                 <  6:302064/143‑1 (MQ=255)                          tCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCggg                                                                                                                                 >  5:302064/1‑143 (MQ=255)                          tCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAg                                                                                                                           >  3:338695/1‑149 (MQ=255)                            gAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGAGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGATCAGgc                                                                                                                         <  7:341706‑M2/149‑3 (MQ=255)                            gAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCATGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgc                                                                                                                         >  4:318655‑M2/1‑147 (MQ=255)                             aaaTAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgc                                                                                                                         >  8:52216‑M2/1‑146 (MQ=255)                             aaaTAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgc                                                                                                                         <  7:52216‑M2/148‑3 (MQ=255)                                    cgcTGTTGTAACGGCCGGGGGTGAGCTGCACCGCGGTGGGGTTGGCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGGTGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCgtgttccccgaactgtttgccgcccagcgcatcgcg                                                                                                                 <  2:325787‑M1/149‑37 (MQ=255)                                    cgcTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGcatcat                                                                                                                  >  7:5510/1‑148 (MQ=255)                                         ttGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCtt                                                                                                            >  7:295629/1‑149 (MQ=255)                                            aaaCGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCg                                                                                                         <  8:295629/149‑1 (MQ=255)                                            aaaCGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCg                                                                                                         <  6:231280/149‑1 (MQ=255)                                            aaaCGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCGGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCg                                                                                                         <  1:163574/149‑1 (MQ=255)                                                  ccGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCgggg                                                                                                                                <  8:47514/120‑1 (MQ=255)                                                  ccGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTc                                                                                                   >  4:359925/1‑149 (MQ=255)                                                      gCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGc                                                                                               <  2:224321/149‑1 (MQ=255)                                                      gCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGc                                                                                               <  4:338695/149‑1 (MQ=255)                                                        gTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCATGGTGGGGTAGTGATCGATGGGCGCGATGCTCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCAt                                                                                             <  3:81053/149‑1 (MQ=255)                                                         tGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGTGGTATTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATg                                                                                            <  7:231792/149‑1 (MQ=255)                                                           agcagcagcGCGGTGGGGTTGTCCTGTGGGCTGGCGCTCTTGAGCGTGTGCAGCAGCAGGTTGGGGTAGGGATCGTTGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACTGGCGCATCATCATCTTGCGGTCTTCGAGCATGTa                                                                                          <  5:341012/149‑1 (MQ=255)                                                            gcagcaCCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAg                                                                                         >  3:226584/1‑149 (MQ=255)                                                              agcaCCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCggg                                                                                                                                 >  8:105586/1‑107 (MQ=255)                                                                   cgcgGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCctgttccccgaactgtttgccgcccagcgcatcgc                                                                                                                  >  2:356561‑M1/1‑82 (MQ=255)                                                                   cgcgGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCctgttccccgaactgtttgccgcccagcgcatcgc                                                                                                                  <  1:356561‑M1/117‑36 (MQ=255)                                                                         ggggTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTgg                                                                            <  6:292968/149‑1 (MQ=255)                                                                             ttGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAg                                                                                         >  4:277157/1‑132 (MQ=255)                                                                             ttGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAg                                                                                         <  3:277157/132‑1 (MQ=255)                                                                                  cAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTT‑‑GGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAgg                                                                 >  4:139002/1‑149 (MQ=255)                                                                                     tGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGt                                                                >  7:166875/1‑149 (MQ=255)                                                                                      gggCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGtt                                                               <  5:13744/149‑1 (MQ=255)                                                                                      gggCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGtt                                                               <  3:359925/149‑1 (MQ=255)                                                                                      gggCTCGCGCTCTTCAGCGTGTCCAGCAGCAGGGTGGGGGAGTGATCGATGGGCGCGATGCGCGGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCTGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGtt                                                               <  8:341706/149‑1 (MQ=255)                                                                                       ggCTGGCGGGCTTGAGCGTGTCCAGCAGCAGGTTTGGTTAGTGATCGATGGGCGCGATGCGCGGGGCTGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCTGCTGGGGGTGCGCAGGtt                                                               <  4:180913/148‑1 (MQ=255)                                                                                        gCTGGCGCTCTTGAGCGTGTCAAGCAGCAGGTTGGGGTAGTGATCGATGTGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGt                                                             <  6:191191/149‑1 (MQ=255)                                                                                            gcgcTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCt                                                           <  1:282415/147‑1 (MQ=255)                                                                                                           tCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAATCAGTTCGGGGAACAGGCGGATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCt                                          <  1:115218/149‑1 (MQ=255)                                                                                                              agcagcagGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTg                                                                       >  6:329045/1‑117 (MQ=255)                                                                                                              agcagcagGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTg                                                                       <  5:329045/117‑1 (MQ=255)                                                                                                                                 gATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTg                                                                             <  4:165247/92‑1 (MQ=255)                                                                                                                                 gATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTg                                                                             >  3:165247/1‑92 (MQ=255)                                                                                                                                     gATGGGCGCGATGCGCTGGGCGGCAAACAGCTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATc                  <  8:5510/147‑1 (MQ=255)                                                                                                                                       tGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGaca              <  3:139002/149‑1 (MQ=255)                                                                                                                                         tgcgcTATGCGCTGGGCTGCAAACAGTTCGGGGAACAGTCGAATCATCATCTTTCGGGCTTCGAGAATGTAGCTGACGGCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAATTAGCTGCCATCGCCGTCACGTACCAGATCGacac             <  7:161441/147‑1 (MQ=255)                                                                                                                                           cgcgATGCGCTGGGCGGCAAACAGTTCGGGGAACACgcgcatcgcgcccatcgatcactaccccaacctgcacctggacacgctcaagagcgccagcccactggccaaccccaccgcggtgcagctcacccccggccgttacaacagcg          <  2:325787‑M2/149‑114 (MQ=255)                                                                                                                                            gcgATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgcgcatcgcgcccatcgatcactaccccaacctgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcg                                         >  2:356561‑M2/1‑35 (MQ=255)                                                                                                                                            gcgATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgcgcatcgcgcccatcgatcactaccccaacctgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcg                                         <  1:356561‑M2/117‑83 (MQ=255)                                                                                                                                            gcgATGCGCTGGGCGGCAAACAGTTCGGGCAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGc         <  8:166875/149‑1 (MQ=255)                                                                                                                                                   gcctgttccccgaactgtttgccgcccagcgcatcgcgcccatcgatcactaccccaacctgctgctggacatgctcaagagcgccagcccactggacaaccccaccgcggtgctgctcacgcccggccgtttcaacagcgcctatttc  >  4:318655‑M1/1‑2 (MQ=255)                                                                                                                                                   gcctgttccccgaactgtttgccgcccagcgcatcgcgcccatcgatcactaccccaacctgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcggtgctgctcacgcccggccgtttcaacagcgcctattt   <  7:52216‑M1/148‑147 (MQ=255)                                                                                                                                                   gcctgttccccgaactgtttgccgcccagcgcatcgcgcccatcgatcactaccccaacctgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcggtgctgctcacgcccggccgtttcaacagcgcctattt   >  8:52216‑M1/1‑2 (MQ=255)                                                                                                                                                   gcctgatccccgaactgtttgccgcccagcgcatcgcgcccatcgatctctaccccaacctgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcggtgctgctcacgcccggccgtttcaacagcgcctatttc  <  7:341706‑M1/149‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CATTTCCCGGGCCAGGAAGGCATGCTCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGC  >  NC_002947/3078555‑3078849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.