New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3078702	43 (0.760)	3 (0.060)	3/246	NT	7.5%	coding (564/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	= 3078728	33 (0.620)					coding (538/1410 nt)	PP_2688	hypothetical protein

TCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCA  >  NC_002947/3078580‑3078874                                                                                                                                                     |                                                                                                                                                   tCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAg                                                                                                                                                    >  3:338695/1‑149 (MQ=255)   gAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGAGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGATCAGgc                                                                                                                                                  <  7:341706‑M2/149‑3 (MQ=255)   gAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCATGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgc                                                                                                                                                  >  4:318655‑M2/1‑147 (MQ=255)    aaaTAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgc                                                                                                                                                  >  8:52216‑M2/1‑146 (MQ=255)    aaaTAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgc                                                                                                                                                  <  7:52216‑M2/148‑3 (MQ=255)           cgcTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGcatcat                                                                                                                                           >  7:5510/1‑148 (MQ=255)                ttGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCtt                                                                                                                                     >  7:295629/1‑149 (MQ=255)                   aaaCGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCg                                                                                                                                  <  8:295629/149‑1 (MQ=255)                   aaaCGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCg                                                                                                                                  <  6:231280/149‑1 (MQ=255)                   aaaCGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCGGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCg                                                                                                                                  <  1:163574/149‑1 (MQ=255)                         ccGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTc                                                                                                                            >  4:359925/1‑149 (MQ=255)                             gCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGc                                                                                                                        <  4:338695/149‑1 (MQ=255)                             gCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGc                                                                                                                        <  2:224321/149‑1 (MQ=255)                               gTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCATGGTGGGGTAGTGATCGATGGGCGCGATGCTCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCAt                                                                                                                      <  3:81053/149‑1 (MQ=255)                                tGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGTGGTATTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATg                                                                                                                     <  7:231792/149‑1 (MQ=255)                                  agcagcagcGCGGTGGGGTTGTCCTGTGGGCTGGCGCTCTTGAGCGTGTGCAGCAGCAGGTTGGGGTAGGGATCGTTGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACTGGCGCATCATCATCTTGCGGTCTTCGAGCATGTa                                                                                                                   <  5:341012/149‑1 (MQ=255)                                   gcagcaCCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAg                                                                                                                  >  3:226584/1‑149 (MQ=255)                                                ggggTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTgg                                                                                                     <  6:292968/149‑1 (MQ=255)                                                    ttGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAg                                                                                                                  >  4:277157/1‑132 (MQ=255)                                                    ttGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAg                                                                                                                  <  3:277157/132‑1 (MQ=255)                                                         cAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTT‑‑GGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAgg                                                                                          >  4:139002/1‑149 (MQ=255)                                                            tGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGt                                                                                         >  7:166875/1‑149 (MQ=255)                                                             gggCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGtt                                                                                        <  5:13744/149‑1 (MQ=255)                                                             gggCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGtt                                                                                        <  3:359925/149‑1 (MQ=255)                                                             gggCTCGCGCTCTTCAGCGTGTCCAGCAGCAGGGTGGGGGAGTGATCGATGGGCGCGATGCGCGGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCTGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGtt                                                                                        <  8:341706/149‑1 (MQ=255)                                                              ggCTGGCGGGCTTGAGCGTGTCCAGCAGCAGGTTTGGTTAGTGATCGATGGGCGCGATGCGCGGGGCTGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCTGCTGGGGGTGCGCAGGtt                                                                                        <  4:180913/148‑1 (MQ=255)                                                               gCTGGCGCTCTTGAGCGTGTCAAGCAGCAGGTTGGGGTAGTGATCGATGTGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGt                                                                                      <  6:191191/149‑1 (MQ=255)                                                                   gcgcTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCt                                                                                    <  1:282415/147‑1 (MQ=255)                                                                                  tCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAATCAGTTCGGGGAACAGGCGGATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCt                                                                   <  1:115218/149‑1 (MQ=255)                                                                                     agcagcagGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTg                                                                                                <  5:329045/117‑1 (MQ=255)                                                                                     agcagcagGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTg                                                                                                >  6:329045/1‑117 (MQ=255)                                                                                                        gATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTg                                                                                                      >  3:165247/1‑92 (MQ=255)                                                                                                        gATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTg                                                                                                      <  4:165247/92‑1 (MQ=255)                                                                                                            gATGGGCGCGATGCGCTGGGCGGCAAACAGCTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATc                                           <  8:5510/147‑1 (MQ=255)                                                                                                              tGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGaca                                       <  3:139002/149‑1 (MQ=255)                                                                                                                tgcgcTATGCGCTGGGCTGCAAACAGTTCGGGGAACAGTCGAATCATCATCTTTCGGGCTTCGAGAATGTAGCTGACGGCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAATTAGCTGCCATCGCCGTCACGTACCAGATCGacac                                      <  7:161441/147‑1 (MQ=255)                                                                                                                  cgcgATGCGCTGGGCGGCAAACAGTTCGGGGAACACgcgcatcgcgcccatcgatcactaccccaacctgcacctggacacgctcaagagcgccagcccactggccaaccccaccgcggtgcagctcacccccggccgttacaacagcg                                   <  2:325787‑M2/149‑114 (MQ=255)                                                                                                                   gcgATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgcgcatcgcgcccatcgatcactaccccaacctgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcg                                                                  >  2:356561‑M2/1‑35 (MQ=255)                                                                                                                   gcgATGCGCTGGGCGGCAAACAGTTCGGGGAACAGgcgcatcgcgcccatcgatcactaccccaacctgctgctggacacgctcaagagcgccagcccactggacaaccccaccgcg                                                                  <  1:356561‑M2/117‑83 (MQ=255)                                                                                                                   gcgATGCGCTGGGCGGCAAACAGTTCGGGCAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGc                                  <  8:166875/149‑1 (MQ=255)                                                                                                                                        aGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACg             <  4:226584/149‑1 (MQ=255)                                                                                                                                         gTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACgg            <  6:149199/149‑1 (MQ=255)                                                                                                                                                   cAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGATGTTTCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCa  <  4:154512/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TCGAAATAGGCGCTGTTGAAACGGCCGGGCGTGAGCAGCACCGCGGTGGGGTTGTCCAGTGGGCTGGCGCTCTTGAGCGTGTCCAGCAGCAGGTTGGGGTAGTGATCGATGGGCGCGATGCGCTGGGCGGCAAACAGTTCGGGGAACAGGCGCATCATCATCTTGCGGTCTTCGAGCATGTAGCTGACGCCGCTGGGGGTGCGCAGGTTGTCTTCCAGCACGAAGTAGCTGCCATCGCCGTCACGTACCAGATCGACACCGGCAATATGCGCATACAGCCCACGGTGAAGGTCCA  >  NC_002947/3078580‑3078874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.