New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3784426 | 45 (0.790) | 4 (0.070) | 3/246 | NT | 8.8% | coding (750/822 nt) | nikE | nickel ABC transporter ATP‑binding protein |
? | NC_002947 | = 3784484 | 40 (0.750) | coding (808/822 nt) | nikE | nickel ABC transporter ATP‑binding protein |
GCACCGCTTTCGTGCTGATCAGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGT > NC_002947/3784281‑3784571 | gCACCGCTTTCGTGCTGATCAGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAg < 3:13977/149‑1 (MQ=255) cTTTCGTGCTGATCAGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGgcggcg < 8:213011/149‑1 (MQ=255) cTTTCGTGCTGATCAGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGgcggcg < 8:10864/149‑1 (MQ=255) tttCGTGCTGATCAGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGAACGCCCTGTG‑CTTTCCGCACCCCGAGGGCCGGCAGCTGCAGGcggcgg > 6:279732/1‑149 (MQ=255) gcGTGCTGATCAGCCAGGACCTGCGCCTGGTGCAGGACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGgt < 7:160991/147‑1 (MQ=255) tGCTGATCAGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTGACTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGtt < 1:252459/149‑1 (MQ=255) gagcAGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCtg < 7:252802/146‑1 (MQ=255) aTCAGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGTGGCGGTGTTGCCt < 6:275452/147‑1 (MQ=255) aGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTgc < 7:25736/148‑1 (MQ=255) gCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAggcggc < 1:42627/133‑1 (MQ=255) gCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAggcggc > 2:42627/1‑133 (MQ=255) aCCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCg > 7:123654/1‑146 (MQ=255) aGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTTGAGGAACGCCCCATCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAgagga < 2:271693/148‑1 (MQ=255) aGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAgagga < 8:50577/148‑1 (MQ=255) gCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCGGCTGCACGGCGGGCGCAGCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTGGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGaggagg < 7:89222/149‑1 (MQ=255) ccTGGTGCAGTCCTTCTGCCAGCGGGTGGTGCTGCTGCACGGCGGGCGCAGCGGGGAGGAACGCCCCGGCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCGCGCAGAGGAGGc < 5:279732/149‑1 (MQ=255) ccTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGttggcaggccttgcggtgatggcctcctctgcgggcg > 3:96848‑M1/1‑112 (MQ=255) cTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGcc < 8:123654/149‑1 (MQ=255) cTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGc > 4:236128/1‑148 (MQ=255) cAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCGGTGCGCCCGCAGAGGAGGCCATCAcc < 3:236128/149‑1 (MQ=255) gCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTg > 3:315873/1‑149 (MQ=255) ccAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGc > 6:246685/1‑149 (MQ=255) cAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTg > 4:21093/1‑147 (MQ=255) cAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTg < 3:21093/147‑1 (MQ=255) gtgCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGTAGGCCGTCACCGCAAGGCCTGCCAAcagctg > 2:134010‑M2/1‑142 (MQ=255) tgctgctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGttggcaggccttgcggtgatggcctcctctgcgggcgcacaggcaacaccgccgcctgcagctgc < 7:303099‑M1/148‑66 (MQ=255) tgctgctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAAcagctgc > 6:73056‑M2/1‑141 (MQ=255) ctgctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGttggcaggccttgcggtgatggcctcctctgcgggcgcacaggcaacaccgccgcctgcagctgccg < 2:290316‑M1/148‑68 (MQ=255) ctgctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGttggcaggccttgcggtgatggcctcctctgcgggcgcacaggcaacaccgccgcctgcagctgccg < 4:96848‑M1/148‑68 (MQ=255) ctgctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGcac < 4:40812/148‑1 (MQ=255) tgctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCacac > 7:287444/1‑149 (MQ=255) ctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCagag > 7:243963/1‑110 (MQ=255) ctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCagag < 8:243963/110‑1 (MQ=255) ggcgggcgCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGAcacca > 8:249561/1‑149 (MQ=255) gcgcATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGAc > 6:102050/1‑149 (MQ=255) tGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTc < 2:206055/149‑1 (MQ=255) ggaggaACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCg > 2:321873/1‑149 (MQ=255) cccGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCgg > 8:280124/1‑148 (MQ=255) tCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGaaaa > 2:110977/1‑148 (MQ=255) cgcacgACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg < 5:246685/149‑1 (MQ=255) gcacgACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg > 4:94679/1‑148 (MQ=255) gcacgACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg < 3:94679/148‑1 (MQ=255) cacgACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCt < 1:110977/149‑1 (MQ=255) tGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGa < 7:249561/147‑1 (MQ=255) cACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATc > 4:69747/1‑149 (MQ=255) cACCCCGTGGGCAGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATc > 8:42248/1‑149 (MQ=255) aCCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCt > 6:60570/1‑149 (MQ=255) cccGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg < 6:114866/126‑1 (MQ=255) cccGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg > 5:114866/1‑126 (MQ=255) tGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTgcgcgc < 8:287444/149‑1 (MQ=255) cGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAAcagctgccggcccacggggtgcgcaaagcacaggtcgtgcgtgacggggcgttcctccacgatgcgcccgccgtgcagcag < 2:290316‑M2/148‑82 (MQ=255) cGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAAcagctgccggcccacggggtgcgcaaagcacaggtcgtgcgtgacggggcgttcctccacgatgcgcccgccgtgcagcag < 4:96848‑M2/148‑82 (MQ=255) cGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATAACCGCAAGGCCTGCCAACAGCAGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCAGCCCGCATAAc > 4:326262/1‑149 (MQ=255) gCAGCTGttggcaggccttgcggtgatggcctcctctgcgggcgcacaggcaacaccgccgcctgcagctgccggcccacggggtgcgcaaagcacaggtcgtgcgtgacggggcgttcctccacgatgcgcccgccgtgcagcagca > 6:73056‑M1/1‑7 (MQ=255) gCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAAcagctgccggcccacggggtgcgcaaagcacaggtcgtgcgtgacggggcgttcctccacgatgcgcccgccgtgcagcagca < 7:303099‑M2/148‑84 (MQ=255) cAGCTGttggcaggccttgcggtgacggcctactctgcgggcgcacaggcaacaccgccgcctgcagctgccggcccacggggtgcgcaaagcacaggtcgtgcgtgacggggcgttcctccacgatgcgcccgccgtgcagcagcac > 2:134010‑M1/1‑6 (MQ=255) cAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCt < 7:42248/149‑1 (MQ=255) gCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGt < 5:102050/149‑1 (MQ=255) | GCACCGCTTTCGTGCTGATCAGCCATGACCTGAGCCTGGTGCAGTACTTCTGCCAGCGGGTTGTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTG‑CTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGT > NC_002947/3784281‑3784571 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |