New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3784426	45 (0.790)	4 (0.070)	3/246	NT	8.8%	coding (750/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
	?	NC_002947	= 3784484	40 (0.750)					coding (808/822 nt)	nikE	nickel ABC transporter ATP‑binding protein

GTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATGCAGTGACGTGAAATGCTGG  >  NC_002947/3784343‑3784628                                                                                                                                              |                                                                                                                                                 gtgCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGTAGGCCGTCACCGCAAGGCCTGCCAAcagctg                                                                                                                                            >  2:134010‑M2/1‑142 (MQ=255)  tgctgctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAAcagctgc                                                                                                                                           >  6:73056‑M2/1‑141 (MQ=255)    ctgctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGcac                                                                                                                                         <  4:40812/148‑1 (MQ=255)     tgctgcACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCacac                                                                                                                                       >  7:287444/1‑149 (MQ=255)             ggcgggcgCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGAcacca                                                                                                                               >  8:249561/1‑149 (MQ=255)                  gcgcATCGTGGAGGAACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGAc                                                                                                                          >  6:102050/1‑149 (MQ=255)                          tGGAGGAACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTc                                                                                                                  <  2:206055/149‑1 (MQ=255)                           ggaggaACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCg                                                                                                                 >  2:321873/1‑149 (MQ=255)                                     cccGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCgg                                                                                                        >  8:280124/1‑148 (MQ=255)                                         tCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGaaaa                                                                                                    >  2:110977/1‑148 (MQ=255)                                            cgcacgACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg                                                                                                <  5:246685/149‑1 (MQ=255)                                             gcacgACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg                                                                                                <  3:94679/148‑1 (MQ=255)                                             gcacgACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg                                                                                                >  4:94679/1‑148 (MQ=255)                                              cacgACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCt                                                                                              <  1:110977/149‑1 (MQ=255)                                                            tGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGa                                                                                  <  7:249561/147‑1 (MQ=255)                                                                cACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATc                                                                            >  4:69747/1‑149 (MQ=255)                                                                cACCCCGTGGGCAGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATc                                                                            >  8:42248/1‑149 (MQ=255)                                                                 aCCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCt                                                                           >  6:60570/1‑149 (MQ=255)                                                                   cccGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg                                                                                                <  6:114866/126‑1 (MQ=255)                                                                   cccGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAgg                                                                                                >  5:114866/1‑126 (MQ=255)                                                                       tGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTgcgcgc                                                                     <  8:287444/149‑1 (MQ=255)                                                                            cGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAAcagctgccggcccacggggtgcgcaaagcacaggtcgtgcgtgacggggcgttcctccacgatgcgcccgccgtgcagcag                                                                 <  2:290316‑M2/148‑82 (MQ=255)                                                                            cGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAAcagctgccggcccacggggtgcgcaaagcacaggtcgtgcgtgacggggcgttcctccacgatgcgcccgccgtgcagcag                                                                 <  4:96848‑M2/148‑82 (MQ=255)                                                                            cGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATAACCGCAAGGCCTGCCAACAGCAGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCAGCCCGCATAAc                                                                >  4:326262/1‑149 (MQ=255)                                                                              gCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAAcagctgccggcccacggggtgcgcaaagcacaggtcgtgcgtgacggggcgttcctccacgatgcgcccgccgtgcagcagca                                                               <  7:303099‑M2/148‑84 (MQ=255)                                                                               cAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCt                                                             <  7:42248/149‑1 (MQ=255)                                                                                 gCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGt                                                           <  5:102050/149‑1 (MQ=255)                                                                                            cggTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGAc                                                >  5:157332/1‑149 (MQ=255)                                                                                                 ttGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACt                                           >  1:182535/1‑149 (MQ=255)                                                                                                    ccTGTGCGCCCGCAGAGTAGGCCATCACCGCAAGGCCTGCCAAGAGCTTCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCAGCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTcc                                         <  3:326262/148‑1 (MQ=255)                                                                                                        tgCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACCCCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATACCCCTGTTCAGCCAAGACCGACTCCGATc                                     >  2:11726/1‑148 (MQ=255)                                                                                                        tgCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATc                                     <  1:321873/148‑1 (MQ=255)                                                                                                        tgCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTACACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATc                                     >  3:334241/1‑148 (MQ=255)                                                                                                          cgcCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAAcagctgccggcccacggggtgcgcaaagcacaggtcgtgcgtgacggggcgttcctccacgatgcgcccgccgtgcagcagcacaacccgctggcagaagtactgcaccagg                                  >  3:96848‑M2/1‑37 (MQ=255)                                                                                                          cgcCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCaa                                   <  3:69747/148‑1 (MQ=255)                                                                                                          cgcCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAg                                  <  1:142069/149‑1 (MQ=255)                                                                                                           gcCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTc                                                                                                                  <  6:191798/68‑1 (MQ=255)                                                                                                           gcCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTc                                                                                                                  >  5:191798/1‑68 (MQ=255)                                                                                                                       ggCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATg                     <  2:182535/149‑1 (MQ=255)                                                                                                                        gCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATg                     >  2:145460/1‑148 (MQ=255)                                                                                                                           aTCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTgcgcg                                                                      >  8:300755/1‑96 (MQ=255)                                                                                                                           aTCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTgcgcg                                                                      <  7:300755/96‑1 (MQ=255)                                                                                                                            tCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATGCAGt                 >  2:132865/1‑148 (MQ=255)                                                                                                                              aCCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAg                                  >  5:98733/1‑129 (MQ=255)                                                                                                                              aCCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAg                                  <  6:98733/129‑1 (MQ=255)                                                                                                                              aCCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATGCAGTGAc              <  7:280124/149‑1 (MQ=255)                                                                                                                                cGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATGCAGTGACGt            <  1:145460/149‑1 (MQ=255)                                                                                                                                  cAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATGCAGTGACGTg           >  3:353418/1‑148 (MQ=255)                                                                                                                                           ccAACATGTGCACACTGACACCACTGACTTGCTTTCGGATCGTCGGAAATCAGGCTATGTTCACCAGACTGATATGCGCGCATAACCCTGTTCAGCCAAGACCGTCTCCGTTCAAGGATACGATCCAt                      <  3:57984/128‑1 (MQ=255)                                                                                                                                           ccAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATGCAGTGACGTGAAATGCTgg  <  5:60570/148‑1 (MQ=255)                                                                                                                                           ccAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATGCAGTGACGTGAAATGCTg   <  6:157332/147‑1 (MQ=255)                                                                                                                                           ccAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCCCATAACCCTCTTCAGCCAACACCGACTCAGATCAAGGAAAAGATCCAt                      >  4:57984/1‑128 (MQ=255)                                                                                                                                           ccAACAGCTACACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATGCAGTGACGTGAAATGCTg   <  4:334241/147‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                 GTGCTGCTGCACGGCGGGCGCATCGTGGAGGAACGCCCCGTCACGCACGACCTGTGCTTTGCGCACCCCGTGGGCCGGCAGCTGCAGGCGGCGGTGTTGCCTGTGCGCCCGCAGAGGAGGCCATCACCGCAAGGCCTGCCAACAGCTGCACACTGACACCACAGACTGGCTTTCGGATCGTCGGAAAACAGGCTATGTTCACCAGACTGATCTGCGCGCATAACCCTGTTCAGCCAAGACCGACTCCGATCAAGGAAACGATCCATGCAGTGACGTGAAATGCTGG  >  NC_002947/3784343‑3784628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.