New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3838086 | 50 (0.880) | 3 (0.060) | 3/248 | NT | 5.8% | coding (1681/2673 nt) | PP_3388 | hypothetical protein |
? | NC_002947 | = 3838149 | 49 (0.910) | coding (1744/2673 nt) | PP_3388 | hypothetical protein |
AACCGCCGTCAGCGTCATCCTTCGCCCTGCCGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGG > NC_002947/3837940‑3838231 | aaCCGCCGTCAGCGTCATCCTTCGCCCTGCCGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTAc > 2:66479/1‑149 (MQ=37) gccgTCAGCGTCATCCTTCGCCCTGCCGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTcg < 3:227217/149‑1 (MQ=37) gCGTCATCCTTCGCCCTGCCGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTggg < 6:43511/149‑1 (MQ=39) tcatcaTTCGCCCTGCAGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCATGGTACGTCGCGCTGGggcg > 6:140593/1‑149 (MQ=255) aTCCTTCGCCCTGCCGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGggcgg > 1:158957/1‑148 (MQ=39) gCCCTGCCGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGtgct < 5:327451/149‑1 (MQ=39) ccTTCCGGAAGCGCTTGACAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGtgctg < 6:252171/148‑1 (MQ=255) ccGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCAc < 5:285480/149‑1 (MQ=39) cGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCAcc > 2:198281/1‑149 (MQ=39) gAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGT < 2:89016‑M1/115‑1 (MQ=255) gAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGT > 1:89016‑M1/1‑115 (MQ=255) gCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAg < 5:194510/127‑1 (MQ=40) gCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAg > 6:194510/1‑127 (MQ=40) gCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGAACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTTGTACGTCGCGCTGGGGCGGCAAGTGCTgcgc < 2:288168/135‑1 (MQ=255) gCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGAACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTgcgc > 1:288168/1‑135 (MQ=255) aGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAg < 1:174147/149‑1 (MQ=255) gCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑TTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATg < 7:345786/138‑1 (MQ=255) gCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATg > 8:345786/1‑138 (MQ=40) cTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCGTCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGa > 6:79468/1‑139 (MQ=255) cAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCa < 1:328587/131‑1 (MQ=40) cAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGAAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCa > 2:328587/1‑131 (MQ=255) aaTGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCac < 5:143212‑M2/147‑3 (MQ=255) aTGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTgcagcgcgcggtccatgctgttgggggtggcggtgcgcagcacttgccgccccagcgcgacgtaccag < 3:104829‑M1/149‑69 (MQ=255) cTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGAc > 2:185766/1‑130 (MQ=40) cTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGAc < 1:185766/130‑1 (MQ=40) gggCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCg > 5:219472/1‑149 (MQ=255) gcgcATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTgcagcgcgcggtccatgctgttgggggtggcggtgcgcagcacttgccgccccagcgcgacgtaccaggc < 2:346371‑M1/141‑71 (MQ=255) gcgcATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTgcagcgcgcggtccatgctgttgggggtggcggtgcgcagcacttgccgccccagcgcgacgtaccaggc > 1:346371‑M1/1‑71 (MQ=255) gcacATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGc > 2:222703/4‑149 (MQ=255) cATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGa < 1:66479/149‑1 (MQ=255) aaCACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCTCGCGCTGCACCAGGGTTTGCGGCTGACttt < 5:140593/149‑1 (MQ=255) acacCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCgg < 7:74505/140‑1 (MQ=255) acacCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCgg > 8:74505/1‑140 (MQ=255) acacCCTGTACGAACAGATGAAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGAACCAGGGTTTGCGGCTGACTATg > 6:239528/1‑149 (MQ=255) cccTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTTCACCAGGGTTTGCGGCTGACTTTGTTc < 5:239528/149‑1 (MQ=255) ccTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACcgcgc < 5:116995/117‑1 (MQ=255) ccTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACcgcgc > 6:116995/1‑117 (MQ=255) ccTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCg > 4:98662/1‑149 (MQ=255) tACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTc < 2:158957/149‑1 (MQ=255) gAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGt > 2:40830/1‑149 (MQ=255) aCAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCt > 8:131777/1‑129 (MQ=40) aCAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCt < 7:131777/129‑1 (MQ=40) aGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGAGTTTGCGGCTGAGTTTGTTCGGTTCGGTGCATGAAACg > 4:245141/1‑149 (MQ=255) acaGAGCAGCACGGCCAGCATCGGCCTGGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACgg > 1:21587/1‑147 (MQ=255) acaGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACgg < 2:21587/146‑1 (MQ=39) caGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGTTGt < 1:222703/149‑1 (MQ=255) agagCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTc > 6:17360/1‑149 (MQ=39) gagCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTc > 1:139904/1‑148 (MQ=39) agcagcACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGa < 5:17360/149‑1 (MQ=39) aCGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCg < 1:198281/149‑1 (MQ=39) cGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGc < 6:219472/149‑1 (MQ=39) gCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCt < 3:98662/149‑1 (MQ=39) tCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGaa < 7:68894/149‑1 (MQ=39) gCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTc < 6:186290/128‑1 (MQ=255) gCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTc > 5:186290/1‑128 (MQ=255) tATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCAc < 6:143212/148‑1 (MQ=39) gCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCaccaggcatacaggccgatgctggccgtgctgctctgtgcctgcatctgttcgtacagggtgttgatgcgc < 2:346371‑M2/141‑72 (MQ=255) gCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCaccaggcatacaggccgatgctggccgtgctgctctgtgcctgcatctgttcgtacagggtgttgatgcgc > 1:346371‑M2/1‑70 (MQ=255) gCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAg > 7:338122/1‑149 (MQ=39) cTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCaccaggcatacaggccgatgctggccgtgctgctctgtgcctgcatctgttcgtacagggtgttgatgcgcccaaaggcat < 3:104829‑M2/149‑82 (MQ=255) tGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGc < 6:321903/126‑1 (MQ=40) tGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGc > 5:321903/1‑126 (MQ=40) gTgcagcgcgcggtccatgctgttgggggtggcggtgcgcagcacttgccgccccagcgcgacgtaccaggcatacaggccgatgctggccgtgctgctctgtgcctgcatctgttcgtacagggtgttgatgcgcccaaaggcatt < 5:143212‑M1/147‑146 (MQ=255) | AACCGCCGTCAGCGTCATCCTTCGCCCTGCCGGAAGCGCTTGCCAGGCAAGCCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGG > NC_002947/3837940‑3838231 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |