New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3838086	50 (0.880)	3 (0.060)	3/248	NT	5.8%	coding (1681/2673 nt)	PP_3388	hypothetical protein
	?	NC_002947	= 3838149	49 (0.910)					coding (1744/2673 nt)	PP_3388	hypothetical protein

AATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCT  >  NC_002947/3838005‑3838295                                                                                                                                                  |                                                                                                                                                   aaTGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCac                                                                                                                                                  <  5:143212‑M2/147‑3 (MQ=255)          gggCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCg                                                                                                                                       >  5:219472/1‑149 (MQ=255)            gcacATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGc                                                                                                                                     >  2:222703/4‑149 (MQ=255)               cATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGa                                                                                                                                  <  1:66479/149‑1 (MQ=255)                   aaCACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCTCGCGCTGCACCAGGGTTTGCGGCTGACttt                                                                                                                              <  5:140593/149‑1 (MQ=255)                    acacCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCgg                                                                                                                                      >  8:74505/1‑140 (MQ=255)                    acacCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCgg                                                                                                                                      <  7:74505/140‑1 (MQ=255)                    acacCCTGTACGAACAGATGAAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGAACCAGGGTTTGCGGCTGACTATg                                                                                                                             >  6:239528/1‑149 (MQ=255)                       cccTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTTCACCAGGGTTTGCGGCTGACTTTGTTc                                                                                                                          <  5:239528/149‑1 (MQ=255)                        ccTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCg                                                                                                                         >  4:98662/1‑149 (MQ=255)                            tACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTc                                                                                                                     <  2:158957/149‑1 (MQ=255)                               gAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGt                                                                                                                  >  2:40830/1‑149 (MQ=255)                                 aCAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCt                                                                                                                                    >  8:131777/1‑129 (MQ=40)                                 aCAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCt                                                                                                                                    <  7:131777/129‑1 (MQ=40)                                         aGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGAGTTTGCGGCTGAGTTTGTTCGGTTCGGTGCATGAAACg                                                                                                        >  4:245141/1‑149 (MQ=255)                                             acaGAGCAGCACGGCCAGCATCGGCCTGGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACgg                                                                                                       >  1:21587/1‑147 (MQ=255)                                             acaGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACgg                                                                                                       <  2:21587/146‑1 (MQ=39)                                              caGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGTTGt                                                                                                   <  1:222703/149‑1 (MQ=255)                                               agagCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTc                                                                                                  >  6:17360/1‑149 (MQ=39)                                                gagCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTc                                                                                                  >  1:139904/1‑148 (MQ=39)                                                 agcagcACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGa                                                                                                <  5:17360/149‑1 (MQ=39)                                                       aCGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCg                                                                                          <  1:198281/149‑1 (MQ=39)                                                        cGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGc                                                                                         <  6:219472/149‑1 (MQ=39)                                                          gCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCt                                                                                       <  3:98662/149‑1 (MQ=39)                                                                 tCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGaa                                                                                <  7:68894/149‑1 (MQ=39)                                                                    gCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTc                                                                                                  <  6:186290/128‑1 (MQ=255)                                                                    gCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTc                                                                                                  >  5:186290/1‑128 (MQ=255)                                                                          tATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCAc                                                                         <  6:143212/148‑1 (MQ=39)                                                                             gCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCaccaggcatacaggccgatgctggccgtgctgctctgtgcctgcatctgttcgtacagggtgttgatgcgc                                                                             <  2:346371‑M2/141‑72 (MQ=255)                                                                             gCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCaccaggcatacaggccgatgctggccgtgctgctctgtgcctgcatctgttcgtacagggtgttgatgcgc                                                                             >  1:346371‑M2/1‑70 (MQ=255)                                                                             gCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAg                                                                     >  7:338122/1‑149 (MQ=39)                                                                               cTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCaccaggcatacaggccgatgctggccgtgctgctctgtgcctgcatctgttcgtacagggtgttgatgcgcccaaaggcat                                                                   <  3:104829‑M2/149‑82 (MQ=255)                                                                                tGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGc                                                                                         >  5:321903/1‑126 (MQ=40)                                                                                tGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGc                                                                                         <  6:321903/126‑1 (MQ=40)                                                                                          cgcTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATc                                                        <  2:357339/149‑1 (MQ=39)                                                                                                      aaGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAATGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAAcg                                             >  5:314938/1‑148 (MQ=37)                                                                                                             gcgcACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCca                                                  <  1:76126/136‑1 (MQ=37)                                                                                                             gcgcACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCca                                                  >  2:76126/1‑136 (MQ=37)                                                                                                             gcgcACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAAcgcagcgcag                                     >  6:162610/1‑149 (MQ=37)                                                                                                              cgcACCGCCACCCCCAAGAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTTGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAAcgcagcgcag                                     <  3:96924/148‑1 (MQ=255)                                                                                                                cACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCcac                                                 <  1:182889/134‑1 (MQ=37)                                                                                                                cACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCcac                                                 >  2:182889/1‑134 (MQ=37)                                                                                                                 aCCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCa                                 <  1:40830/149‑1 (MQ=37)                                                                                                                   tgCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAgg                               >  6:90015/2‑149 (MQ=37)                                                                                                                   cGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAgg                               >  8:92233/1‑149 (MQ=37)                                                                                                                     ccACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCTTGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTa                             >  3:339270/1‑149 (MQ=25)                                                                                                                       aCCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATc                           <  7:52277/149‑1 (MQ=34)                                                                                                                         ccccAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATc                           >  3:358582/1‑147 (MQ=34)                                                                                                                           ccAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAgg                       <  2:139904/149‑1 (MQ=34)                                                                                                                                aGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCt                  <  8:338122/149‑1 (MQ=34)                                                                                                                                  cATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTc                 >  6:134623/1‑148 (MQ=34)                                                                                                                                    tGGACCGCGCGCTGCACCATGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGAc              <  7:331765/149‑1 (MQ=21)                                                                                                                                       aCCGCGCGCTGCCCCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGCCCAGGTATCAAGGTACCTCGCCCAg           >  4:100890/1‑149 (MQ=255)                                                                                                                                                tGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCTACCAGGCTTGGGCt  >  7:61761/1‑149 (MQ=17)                                                                                                                                                  |                                                                                                                                                   AATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCT‑GTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTACCTCGACCAGGCTTGGGCT  >  NC_002947/3838005‑3838295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.