New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 403144644 (0.780)3 (0.060) 3/246 NT 6.5% coding (1109/1770 nt) PP_3554 acyl‑CoA dehydrogenase family protein
?NC_002947 = 4031526 45 (0.840)coding (1189/1770 nt) PP_3554 acyl‑CoA dehydrogenase family protein

GAGCGCCTGCAGAGCCGCGCAGCGACTGGCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGG  >  NC_002947/4031298‑4031593
                                                                                                                                                    |                                                                                                                                                   
gAGCGCCTGCAGAGCCGCGCAGCGACTGGCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCA                                                                                                                                                     <  5:88268‑M1/149‑1 (MQ=255)
       tGCAGAGCAGCGCAGCGACTGGCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCCCCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCCCCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCCACTg                                                                                                                                              >  6:366752/1‑149 (MQ=255)
        gCAGAGCCGCGCAGCGACTGGCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTgg                                                                                                                                             >  3:98884/1‑149 (MQ=255)
            agCCGCGCAGCGACTGGCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGt                                                                                                                                         <  5:336294/149‑1 (MQ=255)
            agCCGCGCAGCGACTGGCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGt                                                                                                                                         <  7:99659/149‑1 (MQ=255)
                            gCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCg                                                                                                                           >  2:232775/1‑147 (MQ=255)
                            gCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGaa                                                                                                                         <  1:232775/149‑1 (MQ=255)
                            gCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGa                                                                                                                          <  4:98884/148‑1 (MQ=255)
                             cccGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAg                                                                                                                        <  8:115117/149‑1 (MQ=255)
                                 cAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGc                                                                                                                    <  5:91346/149‑1 (MQ=255)
                                 cAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGc                                                                                                                    <  5:42381/149‑1 (MQ=255)
                                  aGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCt                                                                                                                   <  8:284394/149‑1 (MQ=255)
                                     catacGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgc                                                                                                                >  5:84904/4‑149 (MQ=255)
                                       cacGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgcga                                                                                                              <  5:283378/149‑1 (MQ=255)
                                       cacGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgc                                                                                                                >  1:65410/1‑147 (MQ=255)
                                        acGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAccggtgtcagcagtgccaccaggcgctgggcatgctcgcg                                                                                                             >  3:154739‑M1/1‑109 (MQ=255)
                                        acGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgcgag                                                                                                             >  5:60721/1‑149 (MQ=255)
                                             aaGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgcgagcgcga                                                                                                        <  2:65410/149‑1 (MQ=255)
                                                  ggcCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATg                                                                                                   >  5:329570/1‑149 (MQ=255)
                                                   gcCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGc                                                                                                  <  2:91865/149‑1 (MQ=255)
                                                         ccGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAgcg                                                                                            >  2:65596/1‑149 (MQ=255)
                                                            atcatcCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgcgag                                                                                                             >  6:349890/1‑129 (MQ=255)
                                                            atcatcCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgcgag                                                                                                             <  5:349890/129‑1 (MQ=255)
                                                             tcatcCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCtg                                                                                        <  1:65596/149‑1 (MQ=255)
                                                                  caccaTGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCtggtgg                                                                                    <  6:329570/148‑1 (MQ=255)
                                                                         gTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCActgct                                                                             <  7:275750/148‑1 (MQ=255)
                                                                                tCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCgg                                                                     >  7:174035/1‑149 (MQ=255)
                                                                                  ggCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGtg                                                                   >  2:33469‑M2/1‑147 (MQ=255)
                                                                                  ggCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGt                                                                    >  6:84904‑M2/1‑147 (MQ=255)
                                                                                   gcgcATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGtgg                                                                  >  7:149539‑M2/1‑146 (MQ=255)
                                                                                     gcATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAccggtgtcagcagtgccaccaggcgctgggcatgctcgcgctcgccagcgtcttcggcatagcgtgccacgtccagttgctggcc                                                                <  4:154739‑M1/149‑86 (MQ=255)
                                                                                         gctgctGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgcgagcgcg                                                                                                         >  5:268410/1‑104 (MQ=255)
                                                                                         gctgctGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgcgagcgcg                                                                                                         <  6:268410/104‑1 (MQ=255)
                                                                                          ctgctgACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAccggtgtcagcagtgccaccaggcgctgggcatgctcgcgctcgccagcgtcttcggcatagcgtgccacgtccagttgctggccaacg                                                            <  3:192696‑M1/148‑90 (MQ=255)
                                                                                           tgctgACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCAt                                                                                                    >  5:170112/1‑107 (MQ=255)
                                                                                           tgctgACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCAt                                                                                                    <  6:170112/107‑1 (MQ=255)
                                                                                                aCCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGACAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGCCAGCGGTGGGCTAGGCAttct                                                      >  8:164322/1‑148 (MQ=255)
                                                                                                       gcACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgcgag                                                                                                             >  2:337030/1‑86 (MQ=255)
                                                                                                       gcACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGgcgag                                                                                                             <  1:337030/86‑1 (MQ=255)
                                                                                                         aCCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCCCGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATaa                                            >  4:305970/1‑149 (MQ=255)
                                                                                                           ccTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACg                                          >  5:252418/1‑149 (MQ=255)
                                                                                                              cACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGcc                                       >  4:205091/1‑149 (MQ=255)
                                                                                                                ccGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTg                                     <  6:60721/149‑1 (MQ=255)
                                                                                                                 cGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTg                                     >  2:176121/1‑148 (MQ=255)
                                                                                                                   aaGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACt                                                 >  2:168615/1‑134 (MQ=255)
                                                                                                                   aaGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACt                                                 <  1:168615/134‑1 (MQ=255)
                                                                                                                      cAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCAttc                                                       <  5:318462/125‑1 (MQ=255)
                                                                                                                      cAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCAttc                                                       >  6:318462/1‑125 (MQ=255)
                                                                                                                                    gCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGc                   >  8:51288/1‑147 (MQ=255)
                                                                                                                                            cGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGtggccaacgtagacggcgaacgcccgacctgcttcggtgagggtgcgcatggtcagcag          <  3:192696‑M2/148‑60 (MQ=255)
                                                                                                                                            cGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGgt           <  6:252418/147‑1 (MQ=255)
                                                                                                                                             gTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTa        <  3:305970/149‑1 (MQ=255)
                                                                                                                                                ggCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGtggccaacgtagacggcgaacgcccgacctgcttcggtgagggtgcgcatggtcagcagcatgc     <  4:154739‑M2/149‑65 (MQ=255)
                                                                                                                                                 gCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATgg     <  1:176121/148‑1 (MQ=255)
                                                                                                                                                  ccAccggtgtcagcagtgccaccaggcgctgggcatgctcgcgctcgccagcgtcttcggcatagcgtgccacgtccagttgctggccaacgtagacggcgaacgcccgacctgcttcggtgagggtgcgcatggtcagcagcatgcgc   >  7:149539‑M1/1‑3 (MQ=255)
                                                                                                                                                   cAccggtgtcagcagtgccaccaggcgctgggcatgctcgcgctcgccagcgtcttcggcatagcgtgccacgtccagttgctggccaacgtagacggcgaacgcccgacctgcttcggtgagggtgcgcatggtcagcagcatgcgcc  >  2:33469‑M1/1‑2 (MQ=255)
                                                                                                                                                   cAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGgt           >  2:303884/1‑140 (MQ=255)
                                                                                                                                                   cAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGgt           <  1:303884/140‑1 (MQ=255)
                                                                                                                                                   cAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCgg  <  7:51288/149‑1 (MQ=255)
                                                                                                                                                    accggtgtcagcagtgccaccaggcgctgggcatgctcgcgctcgccagcgtcttcggcatagcgtgccacgtccagttgctggccaacgtagacggcgaacgcccgacctgcttcggtgagggtgcgcatggtcagcagcatgcgcc  >  6:84904‑M1/1‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GAGCGCCTGCAGAGCCGCGCAGCGACTGGCCCGCAGGCACACGACAAGGCGGCCGACCCGATCATCCACCATGGTGATGTTCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGG  >  NC_002947/4031298‑4031593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.