New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4031446	44 (0.780)	3 (0.060)	3/246	NT	6.5%	coding (1109/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 4031526	45 (0.840)					coding (1189/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein

TCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGCATTGCACAGATCTATGAGGGCACCAAC  >  NC_002947/4031378‑4031672                                                                                                                                                     |                                                                                                                                                   tCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCgg                                                                                                                                                    >  7:174035/1‑149 (MQ=255)   ggCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGtg                                                                                                                                                  >  2:33469‑M2/1‑147 (MQ=255)   ggCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGt                                                                                                                                                   >  6:84904‑M2/1‑147 (MQ=255)    gcgcATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGtgg                                                                                                                                                 >  7:149539‑M2/1‑146 (MQ=255)                 aCCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGACAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGCCAGCGGTGGGCTAGGCAttct                                                                                                                                     >  8:164322/1‑148 (MQ=255)                          aCCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCCCGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATaa                                                                                                                           >  4:305970/1‑149 (MQ=255)                            ccTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACg                                                                                                                         >  5:252418/1‑149 (MQ=255)                               cACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGcc                                                                                                                      >  4:205091/1‑149 (MQ=255)                                 ccGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTg                                                                                                                    <  6:60721/149‑1 (MQ=255)                                  cGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTg                                                                                                                    >  2:176121/1‑148 (MQ=255)                                    aaGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACt                                                                                                                                <  1:168615/134‑1 (MQ=255)                                    aaGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACt                                                                                                                                >  2:168615/1‑134 (MQ=255)                                       cAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCAttc                                                                                                                                      >  6:318462/1‑125 (MQ=255)                                       cAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCAttc                                                                                                                                      <  5:318462/125‑1 (MQ=255)                                                     gCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGc                                                                                                  >  8:51288/1‑147 (MQ=255)                                                             cGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGtggccaacgtagacggcgaacgcccgacctgcttcggtgagggtgcgcatggtcagcag                                                                                         <  3:192696‑M2/148‑60 (MQ=255)                                                             cGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGgt                                                                                          <  6:252418/147‑1 (MQ=255)                                                              gTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTa                                                                                       <  3:305970/149‑1 (MQ=255)                                                                 ggCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGtggccaacgtagacggcgaacgcccgacctgcttcggtgagggtgcgcatggtcagcagcatgc                                                                                    <  4:154739‑M2/149‑65 (MQ=255)                                                                  gCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATgg                                                                                    <  1:176121/148‑1 (MQ=255)                                                                    cAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGgt                                                                                          <  1:303884/140‑1 (MQ=255)                                                                    cAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGgt                                                                                          >  2:303884/1‑140 (MQ=255)                                                                    cAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCgg                                                                                 <  7:51288/149‑1 (MQ=255)                                                                                  ggCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATcc                                                                   >  6:169282/1‑149 (MQ=255)                                                                                   gCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCcg                                                                  >  2:174368/1‑149 (MQ=255)                                                                                     aCGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCcgc                                                                 >  6:96464/1‑148 (MQ=255)                                                                                           tGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGCTCATGGCTACATCCGCGAATggg                                                          >  1:284213/1‑149 (MQ=255)                                                                                            gCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATgggg                                                         >  7:46992/1‑149 (MQ=255)                                                                                              cGAAGACGCTGGCGAGCGCGAGCATGCTCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAAGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGc                                                        >  1:10894/1‑148 (MQ=255)                                                                                              cGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGc                                                        >  7:182253/1‑148 (MQ=255)                                                                                               gAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCa                                                      <  5:96464/149‑1 (MQ=255)                                                                                                    cGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGt                                                                                >  7:323990/1‑118 (MQ=255)                                                                                                    cGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGt                                                                                <  8:323990/118‑1 (MQ=255)                                                                                                     gCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATg                                                                                     >  2:243471/1‑112 (MQ=255)                                                                                                          cgagcgcgagcATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAAGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACggg                                           <  2:10894/149‑1 (MQ=255)                                                                                                             gcgcgagcATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGc                                        <  3:205091/149‑1 (MQ=255)                                                                                                              cgcgagcATGCCCAGCGCCTGGTGGCACTGCTGACACCGGtggccaacgtagacggcgaacgcccgacctgcttcggtgagggtgcgcatggtcagcagcatgcgccgaacatcaccatggtggatgatcgggtcggccgccttgtcgt                                       >  3:154739‑M2/1‑40 (MQ=255)                                                                                                                cgagcATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCggg                                     <  1:174368/149‑1 (MQ=255)                                                                                                                       gCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGcc                                                       <  6:275306/124‑1 (MQ=255)                                                                                                                       gCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGcc                                                       >  5:275306/1‑124 (MQ=255)                                                                                                                         ccAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTgc                               <  4:327410/146‑1 (MQ=255)                                                                                                                         ccAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTgc                               >  3:327410/1‑146 (MQ=255)                                                                                                                         ccAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGCa                            >  8:109963/1‑149 (MQ=255)                                                                                                                            gcgcCTGTTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATTACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGCATTg                         <  7:164322/149‑1 (MQ=255)                                                                                                                                   gtggCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGAATTgaa                       >  6:189218/1‑142 (MQ=255)                                                                                                                                         ctgctgACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGCATTGCACAGATCTATGa            <  8:46992/149‑1 (MQ=255)                                                                                                                                          tgctgACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGt                                          <  4:221081/118‑1 (MQ=255)                                                                                                                                          tgctgACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGt                                          >  3:221081/1‑118 (MQ=255)                                                                                                                                           gctgACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGCATTGCACAGATCTATGAgg          >  2:275572/1‑149 (MQ=255)                                                                                                                                            ctgACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGCATTGCACAGATCTATGAg           <  1:140457/147‑1 (MQ=255)                                                                                                                                            ctgACACCGGTGGCCAACGCATTCTTCACTGATAACGCCCTGGAAACCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGGGCGGGACGTGCGCATTGCACAGATCTATGAg           <  4:221798/147‑1 (MQ=255)                                                                                                                                               acacCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGCATTGCACAGATCTATGAGGGCAc      >  8:268151/1‑149 (MQ=255)                                                                                                                                                   cGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGCATTGCACAGATCTATGAGGGCACCAAc  >  3:84481/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TCGGCGCATGCTGCTGACCATGCGCACCCTCACCGAAGCAGGTCGGGCGTTCGCCGTCTACGTTGGCCAGCAACTGGACGTGGCACGCTATGCCGAAGACGCTGGCGAGCGCGAGCATGCCCAGCGCCTGGTGGCACTGCTGACACCGGTGGCCAAGGCATTCTTCACTGATAACGGCCTGGAAAGCTGCGTGCTTGGCCAGCAGGTGTATGGCGGTCATGGCTACATCCGCGAATGGGGCCAGGAGCAACGGGTGCGGGACGTGCGCATTGCACAGATCTATGAGGGCACCAAC  >  NC_002947/4031378‑4031672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.