New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4394498 =	46 (0.810)	3 (0.050)	3/254	NT	5.9%	coding (474/1488 nt)	PP_3869	sheath protein
	?	NC_002947	4394568 =	50 (0.900)					coding (404/1488 nt)	PP_3869	sheath protein

TGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTACAGGTTGACCTGGCCACCCTCCGTGG  >  NC_002947/4394350‑4394643                                                                                                                                                     |                                                                                                                                                  gcgaggtctggtgcctgccgctcaaggcgaccggtaccaaggcggccggcaaggtgaccatcaccggcaccgccacggagggtggccaggtcaacctgtacatcggcggccagcgcgtgcgcgctacggtagccagtggcgcctcggcg                                                                                                                                                   <  8:89184‑M1/1‑1 (MQ=255)  cgaggtctggtgcctgccgctcaaggcgaccggtaccaaggcggccggcaaggtgaccatcaccggcaccgccacggagggtggccaggtcaacctgtacatcggcggccagcgcgtgcgcgctacggtagccagtggcgcctcggcgg                                                                                                                                                  >  7:304453‑M1/148‑149 (MQ=255)     gACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGACAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTg                                                                                                                                               <  5:83174/149‑1 (MQ=255)       cGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCa                                                                                                                                             <  2:137035/149‑1 (MQ=255)        gCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAg                                                                                                                                            >  4:354315/1‑149 (MQ=255)            ccaGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGc                                                                                                                                        >  2:85980/1‑149 (MQ=255)                    ggCGGTTCCGGTCACGCTGAGGCCAGCAGCCGTCAATGCGCGGTTGCTGCGAGCGTGCCGGTTCTGTTCCAGCTGCTTGTGGTTGCCGCGGTGGCCGGTCCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACg                                                                                                                                 <  8:297630/148‑1 (MQ=255)                           aCCGTCACGTTGCTGCCAGCAGGAGTCACCTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCGGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGc                                                                                                                          <  7:156377/148‑1 (MQ=255)                                   ggTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGcc                                                                                                                               >  8:322504/1‑135 (MQ=255)                                   ggTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGcc                                                                                                                               <  7:322504/135‑1 (MQ=255)                                       aGGCCAGCAGGAGTCACCTCCCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTa                                                                                                              <  8:330222/148‑1 (MQ=255)                                              cagGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTAccgccgcc                                                                                                      <  4:110409/149‑1 (MQ=255)                                               cggcaaggtgaccatcaccggcaccgccacggagggtggccaggtcaacctgtacatcggcggccagcgcgtgcgcgctacggtagccagtggcgcctcggcGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTAccgccgccg                                                                                                     <  6:184980‑M1/47‑1 (MQ=255)                                                      aaCTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAgcgc                                                                                              >  1:354395/1‑149 (MQ=255)                                                          cGCCGTTGCTGCGACCCTGCCGGTTCAGTGCCAGCTGGAGGGCGGTGCCGCTGAGGCCGGACCCGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTg                                                                                          <  4:58614/149‑1 (MQ=255)                                                           gCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTgg                                                                                         >  7:260054/1‑149 (MQ=255)                                                               ttGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCAc                                                                                     <  3:354315/149‑1 (MQ=255)                                                                  ctgcGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACcgccgccgc                                                                                                    >  3:326685/1‑131 (MQ=255)                                                                  ctgcGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACcgccgccgc                                                                                                    <  4:326685/131‑1 (MQ=255)                                                                   tgcGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCcgg                                                                                                                       >  1:72951/1‑111 (MQ=255)                                                                   tgcGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCcgg                                                                                                                       <  2:72951/111‑1 (MQ=255)                                                                    gcGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGgcggcg                                                                                                                  <  8:117987/115‑1 (MQ=255)                                                                    gcGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGgcggcg                                                                                                                  >  7:117987/1‑115 (MQ=255)                                                                        gccacggagggtggccaggtcaacctgtacatcggcggccagcgcgtgcgcgctacggtagccagtggcgcctcggcGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTgccgc                                                                            >  5:184980‑M1/78‑149 (MQ=255)                                                                           tGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTgccgcc                                                                           >  2:164671/1‑147 (MQ=255)                                                                            cggagggtggccaggtcaacctgtacatcggcggccagcgcgtgcgcgctacggtagccagtggcgcctcggcGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAg                                                                        >  7:89184‑M1/74‑149 (MQ=255)                                                                                    aGTTCCAGGTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCAc                                                                 <  8:57171/148‑1 (MQ=255)                                                                                      ttCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTgg                                                              >  1:39883/1‑149 (MQ=255)                                                                                      ttCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTgg                                                              >  3:146582/1‑149 (MQ=255)                                                                                           gCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTAcc                                                         >  5:253150/1‑149 (MQ=255)                                                                                           gCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTAcc                                                         >  8:276255/1‑149 (MQ=255)                                                                                              ggATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGTGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCg                                                        >  5:339188/1‑147 (MQ=255)                                                                                               gATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAg                                                     >  7:160492/1‑149 (MQ=255)                                                                                                      ttGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAg                                                                                            <  6:113035/103‑1 (MQ=255)                                                                                                      ttGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAg                                                                                            >  5:113035/1‑103 (MQ=255)                                                                                                          cGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACgcgc                                          <  7:276255/149‑1 (MQ=255)                                                                                                              gAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGTGCGCGCtacg                                      <  7:86465/149‑4 (MQ=255)                                                                                                              gAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGgc                                      >  7:159399/1‑149 (MQ=255)                                                                                                                ggCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGgccg                                    >  4:195626/1‑149 (MQ=255)                                                                                                                 gCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTAccgcc                                                                                                         <  1:175367/79‑1 (MQ=255)                                                                                                                 gCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTAccgcc                                                                                                         >  2:175367/1‑79 (MQ=255)                                                                                                                   cGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGgccgcc                                  >  6:99195/1‑148 (MQ=255)                                                                                                                      aCCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATg                              <  4:146582/149‑1 (MQ=255)                                                                                                                        cAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCTATACGACAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACAGTAGCGCGCCCGCGCTGGCCGCAGAGGTa                            >  8:267945/1‑149 (MQ=255)                                                                                                                        cAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTa                            >  3:292841/1‑149 (MQ=255)                                                                                                                        cAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTa                            >  7:145035/1‑149 (MQ=255)                                                                                                                        cAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTa                            <  3:195626/149‑1 (MQ=255)                                                                                                                         aGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTAc                           <  6:306619/149‑1 (MQ=255)                                                                                                                                 gTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTACAGGTTGAc                   <  5:99195/149‑1 (MQ=255)                                                                                                                                     gggCCACTTCACCCGTGGCTGCAGGCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTACAGGTTGACCTgg               <  8:191839/149‑1 (MQ=255)                                                                                                                                      ggCCACTCCACCCGGGGCGGCAGGCGCCGAACCGCCAAGGCCGGCGGCGTTTCCCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTACAGGTTGACCTGGc              <  2:354395/149‑1 (MQ=255)                                                                                                                                           cTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTACAGGTTGACCTGGCCAccc         >  5:244384/1‑149 (MQ=255)                                                                                                                                                cccGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTAc                           >  2:306040/1‑126 (MQ=255)                                                                                                                                                 ccGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTACAGGTTGCCCTGGCCCCCCTCCGTg   >  8:156875/1‑149 (MQ=255)                                                                                                                                                 ccGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACT‑GCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTACAGGTTGACCTGGCCACCCTCCGTgg  >  3:307717/1‑149 (MQ=255)                                                                                                                                                     GGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCTCCAGCGCAGTGGCCACCGATGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTACAGGTTGACCTGGCCAcc          <  7:133028‑M1/138‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TGCCGACGCCACCAGTCATGGCGGTTACCGTCACGGTGAGGCCAGCAGGAGTCAACTCGCCGTTGCTGCGACCCTGACGGTTCAGTTCCAGCTGGATGTCGTTGCCGCTGAGGCCGGACCAGCGGCAGGTCAGGGCCACTTCACCCGTGGCTGCAGTCGCCGATACGCCAAGGCCGGCGGCGTTTACCGCCGCCGCCAGCGCAGTGGCCACCGCTGCCGCCGAGGCGCCACTGGCTACCGTAGCGCGCACGCGCTGGCCGCCGATGTACAGGTTGACCTGGCCACCCTCCGTGG  >  NC_002947/4394350‑4394643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.