New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4445662 =	44 (0.780)	3 (0.060)	3/244	NT	6.8%	coding (758/807 nt)	nicD	N‑formylmaleamate deformylase
	?	NC_002947	4445717 =	41 (0.770)					coding (703/807 nt)	nicD	N‑formylmaleamate deformylase

GTGCGTTGAGCATCGCCGGAATTTCGGTTTCCATGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACC  >  NC_002947/4445515‑4445808                                                                                                                                                     |                                                                                                                                                   gtgcgtTGAGCATCGCCGGAATTTCGGTTTCCATGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTc                                                                                                                                                   <  6:311348/149‑1 (MQ=255)  tgcgtTGAGCATCGCCGGAATTTCGGTTTCCATGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTcc                                                                                                                                                  <  5:26134/149‑1 (MQ=255)   gcgtTGAGCATCGCCGGAATTTCGGTTTCCATGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCa                                                                                                                                                 <  1:174868/149‑1 (MQ=255)        gggccttcgatgatttccacgaggtcgatatccaccagtacctgcctccggtgcgccagccggcattgctgatggtggccgggcggggtggagtgatcgagccccgtgacattgctgaaatgcgcgagctcaagccggataTCCAGGTc                                                                                                                                             <  6:232893‑M1/8‑1 (MQ=255)        gggccttcgatgatttcaacgaggtcgatatccaccagtacctgcctgcggtgcgccagccggcattgctgatggtggccgggcggggtggagtgatcgagccccgtgacattgctgaaatgcgcgagctcaagccggataTCCAGGTc                                                                                                                                             >  4:78234‑M1/142‑149 (MQ=255)                    aaTTTCGGTTTCCATGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATc                                                                                                                                <  8:231562/149‑1 (MQ=255)                      tttCGGTTTCCATGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCAt                                                                                                                              <  1:5232/149‑1 (MQ=255)                            tttCCATGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGcc                                                                                                                        >  4:176880/1‑149 (MQ=255)                              tCCATGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCg                                                                                                                       <  3:155709/148‑1 (MQ=255)                               gtcgatatccaccagtacctgcctgcggtgcgccagccggcattgctgatggtggccgggcggggtggagtgatcgagccccgtgacattgctgaaatgcgcgagctcaagccggataTCCAGGTc                                                                                                                                             <  4:184268‑M1/8‑1 (MQ=255)                               gtcgatatccaccagtacctgcctgcggtgcgccagccggcattgctgatggtggccgggcggggtggagtgatcgagccccgtgacattgctgaaatgcgcgagctcaagccggataTCCAGGTc                                                                                                                                             >  3:184268‑M1/119‑126 (MQ=255)                                 aTGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCgg                                                                                                                      >  5:87447/1‑146 (MQ=255)                                 aTGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCgg                                                                                                                      <  6:87447/146‑1 (MQ=255)                                   ggtggtGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTg                                                                                                                 >  2:173156/1‑149 (MQ=255)                                      ggtgTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTCTTGGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTc                                                                                                               >  1:276708/1‑149 (MQ=255)                                       gtgtTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTcc                                                                                                              <  3:176880/148‑1 (MQ=255)                                         gtTCGAACTCGGCATGATGTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCGGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGtt                                                                                                                  <  8:319996/142‑1 (MQ=255)                                          ttCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGt                                                                                                          <  1:173156/149‑1 (MQ=255)                                             gAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTAcg                                                                                                       >  1:243111/1‑149 (MQ=255)                                                  tgcctgcggtgcgccagccggcattgctgatggtggccgggcggggtggagtgatcgagccccgtgacattgctgaaatgcgcgagctcaagccggataTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGAc                                                                                                   <  6:352308‑M1/50‑1 (MQ=255)                                                   ggCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTTTCCACGTACGCGAACt                                                                                                 >  8:101047/1‑149 (MQ=255)                                                     ctgcggtgcgccagccggcattgctgatggtggccgggcggggtggagtgatcgagccccgtgacattgctgaaatgcgcgagctcaagccggataTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTg                                                                                                >  5:352308‑M1/97‑149 (MQ=255)                                                           tgcgccagccggcattgctgatggtggccgggcggggtggagtgatcgagccccgtgacattgctgaaatgcgcgagctcaagccggataTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATc                                                                                          >  5:250617‑M1/91‑149 (MQ=255)                                                            tGGCCGATGCGGTAGAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCg                                                                                        >  7:310699/1‑149 (MQ=255)                                                              gCCGATGCGGTATCGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCTGCGTTGTCCACGTACGCGACCTGGATATcc                                                                                         <  7:101047/146‑1 (MQ=255)                                                              gCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATc                                                                                          <  2:276708/145‑1 (MQ=255)                                                                cGATGGGGTATATCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGTTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGAGCTGGATATCCGGCtt                                                                                    <  4:128204/149‑1 (MQ=255)                                                                  aTGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGa                                                                                                    >  8:286207/1‑131 (MQ=255)                                                                      ggTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGTCGGCGAAGAAACAGTCCAGGTCATCCCACGGCATCATGTGGCCGCCGTTGTCCACGTACGCTACCTGGATATCCGGCTTGAGCTc                                                                              >  5:77890/1‑149 (MQ=255)                                                                                ggTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCa                                                                    <  2:243111/149‑1 (MQ=255)                                                                                          tcGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCa                                                           >  8:125347/1‑149 (MQ=255)                                                                                            gTGCTCCGTCAGACGTGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCa                                                                         <  3:307976/133‑1 (MQ=255)                                                                                            gTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACg                                                         <  7:125347/149‑1 (MQ=255)                                                                                            gTGCACCGTCAGACGAGGGGGTGGTCGAGGAACTCGCCAAAGGCCGCGAAGAAACCCTCCAGGTAATCCCAGGGGATCATGTGGCCGGCGTTGACCACGTACGCGACCTGGATAACCGGCTTGAGCTcgcgaa                                                                         >  4:307976/1‑131 (MQ=255)                                                                                                 ccGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCt                                                    >  4:97094/1‑149 (MQ=255)                                                                                                   gTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTc                                                   >  6:157473/1‑148 (MQ=255)                                                                                                            gggggTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGACCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGCTCACTCCa                                         >  5:232893/1‑149 (MQ=255)                                                                                                                         gAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTc                                           >  4:60661/1‑134 (MQ=255)                                                                                                                         gAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTc                                           <  3:60661/134‑1 (MQ=255)                                                                                                                          aaGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAg                                                                   >  2:188843/1‑109 (MQ=255)                                                                                                                          aaGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAg                                                                   <  1:188843/109‑1 (MQ=255)                                                                                                                          aaGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGccac                           >  4:122550/1‑149 (MQ=255)                                                                                                                               gCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGcca                            >  2:43518/1‑143 (MQ=255)                                                                                                                               gCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGcca                            <  1:43518/143‑1 (MQ=255)                                                                                                                                ccAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAg                     >  2:42903/1‑149 (MQ=255)                                                                                                                                      gcggcgAAGAAACCGGCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGc               <  8:195671/149‑1 (MQ=255)                                                                                                                                        ggcgAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCCCGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATg                <  2:133935/146‑1 (MQ=255)                                                                                                                                        ggcgAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCCCGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATg                >  1:133935/1‑146 (MQ=255)                                                                                                                                           gaagaaACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCt          >  5:184088/1‑149 (MQ=255)                                                                                                                                            aagaaACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTg         <  6:184088/149‑1 (MQ=255)                                                                                                                                             agaaACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTgg        >  3:182933/1‑149 (MQ=255)                                                                                                                                             agaaACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTgg        <  3:122550/149‑1 (MQ=255)                                                                                                                                               aaaCCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCAt                        <  1:243149/131‑1 (MQ=255)                                                                                                                                               aaaCCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCAt                        >  2:243149/1‑131 (MQ=255)                                                                                                                                                   cGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCAcc  >  7:143113/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GTGCGTTGAGCATCGCCGGAATTTCGGTTTCCATGGTGGTGTTCGAACTCGGCACGATCTGGCCGATGCGGTATAGCTGGGTCATGTC‑TCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACC  >  NC_002947/4445515‑4445808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.