New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4445662 =	44 (0.780)	3 (0.060)	3/244	NT	6.8%	coding (758/807 nt)	nicD	N‑formylmaleamate deformylase
	?	NC_002947	4445717 =	41 (0.770)					coding (703/807 nt)	nicD	N‑formylmaleamate deformylase

TCTGGCCGATGCGGTATAGCTGGGTCATGTCTCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCGTGGAAATCATCGAAGGCCCGCACGATC  >  NC_002947/4445572‑4445865                                                                                                                                                  |                                                                                                                                                     tgcgccagccggcattgctgatggtggccgggcggggtggagtgatcgagccccgtgacattgctgaaatgcgcgagctcaagccggataTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATc                                                                                                                                                   >  5:250617‑M1/91‑149 (MQ=255)   tGGCCGATGCGGTAGAGCTGGGTCATGTCTCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCg                                                                                                                                                 >  7:310699/1‑149 (MQ=255)     gCCGATGCGGTATCGCTGGGTCATGTCTCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCTGCGTTGTCCACGTACGCGACCTGGATATcc                                                                                                                                                  <  7:101047/146‑1 (MQ=255)     gCCGATGCGGTATAGCTGGGTCATGTCTCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATc                                                                                                                                                   <  2:276708/145‑1 (MQ=255)       cGATGGGGTATATCTGGGTCATGTCTCGTGCTCCGTCAGACGAGGGGGTGTTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGAGCTGGATATCCGGCtt                                                                                                                                             <  4:128204/149‑1 (MQ=255)             ggTATAGCTGGGTCATGTCTCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGTCGGCGAAGAAACAGTCCAGGTCATCCCACGGCATCATGTGGCCGCCGTTGTCCACGTACGCTACCTGGATATCCGGCTTGAGCTc                                                                                                                                       >  5:77890/1‑149 (MQ=255)                       ggTCATGTCTCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCa                                                                                                                             <  2:243111/149‑1 (MQ=255)                                tcGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCa                                                                                                                    >  8:125347/1‑149 (MQ=255)                                  gTGCTCCGTCAGACGTGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCa                                                                                                                                  <  3:307976/133‑1 (MQ=255)                                  gTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACg                                                                                                                  <  7:125347/149‑1 (MQ=255)                                  gTGCACCGTCAGACGAGGGGGTGGTCGAGGAACTCGCCAAAGGCCGCGAAGAAACCCTCCAGGTAATCCCAGGGGATCATGTGGCCGGCGTTGACCACGTACGCGACCTGGATAACCGGCTTGAGCTcgcgaa                                                                                                                                  >  4:307976/1‑131 (MQ=255)                                       ccGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCt                                                                                                             >  4:97094/1‑149 (MQ=255)                                         gTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTc                                                                                                            >  6:157473/1‑148 (MQ=255)                                                  gggggTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGACCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGCTCACTCCa                                                                                                  >  5:232893/1‑149 (MQ=255)                                                               gAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTc                                                                                                    >  4:60661/1‑134 (MQ=255)                                                               gAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTc                                                                                                    <  3:60661/134‑1 (MQ=255)                                                                aaGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAg                                                                                                                            <  1:188843/109‑1 (MQ=255)                                                                aaGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAg                                                                                                                            >  2:188843/1‑109 (MQ=255)                                                                aaGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGccac                                                                                    >  4:122550/1‑149 (MQ=255)                                                                     gCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGcca                                                                                     <  1:43518/143‑1 (MQ=255)                                                                     gCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGcca                                                                                     >  2:43518/1‑143 (MQ=255)                                                                      ccAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAg                                                                              >  2:42903/1‑149 (MQ=255)                                                                            gcggcgAAGAAACCGGCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGc                                                                        <  8:195671/149‑1 (MQ=255)                                                                              ggcgAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCCCGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATg                                                                         >  1:133935/1‑146 (MQ=255)                                                                              ggcgAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCCCGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATg                                                                         <  2:133935/146‑1 (MQ=255)                                                                                 gaagaaACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCt                                                                   >  5:184088/1‑149 (MQ=255)                                                                                  aagaaACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTg                                                                  <  6:184088/149‑1 (MQ=255)                                                                                   agaaACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTgg                                                                 >  3:182933/1‑149 (MQ=255)                                                                                   agaaACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTgg                                                                 <  3:122550/149‑1 (MQ=255)                                                                                     aaaCCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCAt                                                                                 >  2:243149/1‑131 (MQ=255)                                                                                     aaaCCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCAt                                                                                 <  1:243149/131‑1 (MQ=255)                                                                                       gatatccaggtcgcgtacgtggacaacgccggccacatgatcccctgggatgacctggaTATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCa                                                             >  5:250617‑M2/60‑149 (MQ=255)                                                                                         cGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCAcc                                                           >  7:143113/1‑149 (MQ=255)                                                                                             caggtcgcgtacgtggacaacgccggccacatgatcccctgggatgacctggaTATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCgcag                                                       >  5:352308‑M2/54‑149 (MQ=255)                                                                                                gtcgcgtacgtggacaacgccggccacatgatcccctgggatgacctggaTATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCgcaggca                                                    <  6:352308‑M2/99‑1 (MQ=255)                                                                                                GTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCgcagg                                                      <  5:298880‑M1/147‑1 (MQ=255)                                                                                                   aTCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGcaggcagg                                                  >  2:322183/1‑148 (MQ=255)                                                                                                   aTCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGt                                                 <  5:157473/149‑1 (MQ=255)                                                                                                      ccAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTCCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTg                                                                  <  5:245406/129‑1 (MQ=255)                                                                                                      ccAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTCCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTg                                                                  >  6:245406/1‑129 (MQ=255)                                                                                                       cAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACtg                                             >  4:134878/1‑149 (MQ=255)                                                                                                         ggggATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACtggt                                           <  6:298880/149‑1 (MQ=255)                                                                                                                aTGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATc                                    >  4:112281/1‑149 (MQ=255)                                                                                                                       cGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCg                             >  8:60503/1‑149 (MQ=255)                                                                                                                              gTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCGTGGAAat                      >  4:101068/1‑149 (MQ=255)                                                                                                                                 cACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCGTGGAAatcat                   >  3:349244/1‑149 (MQ=255)                                                                                                                                  aCGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCGTGGAAatcatc                  <  6:281156/149‑1 (MQ=255)                                                                                                                                  aCGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCGTGGAAatcatc                  >  5:281156/1‑149 (MQ=255)                                                                                                                                       cgcgACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCGTGGAAATCATCGAAgg             <  3:101068/149‑1 (MQ=255)                                                                                                                                          gacctggaTATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGGAGGCAGGTACTGGTGGATATCGACCTCGTGGAAATCATCGAAGGccc          <  6:232893‑M2/141‑1 (MQ=255)                                                                                                                                          gacctggaTATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGAc                                 <  4:184268‑M2/118‑1 (MQ=255)                                                                                                                                          gacctggaTATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGAc                                 >  3:184268‑M2/9‑126 (MQ=255)                                                                                                                                          gacctggaTATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCGTTGAAATCATCGAAGGccc          >  4:78234‑M2/9‑149 (MQ=255)                                                                                                                                                  tatCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCGTGGAAATCATCGAAGGCCCGCACGATc  >  6:301022/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TCTGGCCGATGCGGTATAGCTGGGTCATGTCTCGTGCTCCGTCAGACGAGGGGGTGGTCGAGGAAGTCGCCAAAGGCGGCGAAGAAACCGTCCAGGTCATCCCAGGGGATCATGTGGCCGGCGTTGTCCACGTACGCGACCTGGATATCCGGCTTGAGCTCGCGCATTTCAGCAATGTCACGGGGCTCGATCACTCCACCCCGCCCGGCCACCATCAGCAATGCCGGCTGGCGCACCGCAGGCAGGTACTGGTGGATATCGACCTCGTGGAAATCATCGAAGGCCCGCACGATC  >  NC_002947/4445572‑4445865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.