New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4584828	33 (0.580)	3 (0.060)	3/244	NT	8.3%	coding (756/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4584875	35 (0.660)					coding (709/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

AAGTCATCGCGGCTGCCCAGTTGCGGGTGAATCGCCTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGC  >  NC_002947/4584691‑4584965                                                                                                                                          |                                                                                                                                          aaGTCATCGCGGCTGCCCAGTTGCGGGTGAATCGCCTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATggg                                                                                                                                <  7:153398/149‑1 (MQ=255)    tCATCGCGGCTGCCCAGTTGCGGGTGAATCGCCTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCgg                                                                                                                             <  7:281905/149‑1 (MQ=255)         gcgGCTGCCCAGTTGCGGGTGAATCGCCTCGTGGCCGCCCTCCGGTCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGt                                                                                                                        <  6:338187/149‑1 (MQ=255)                  cAGTTGCGGGTGAATCGCCTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGt                                                                                                               <  7:280488/149‑1 (MQ=255)                           gTGAATCGCCTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGTTGGGCGGGAAGTACAGGACGTCGAAGCCCa                                                                                                      >  7:231689/1‑149 (MQ=255)                                tCGCCTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGCAGCCCATGTcg                                                                                                 >  5:204950/1‑149 (MQ=255)                                tCGCCTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTcg                                                                                                 >  7:164289/1‑149 (MQ=255)                                  gCCTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTcgcg                                                                                               >  1:157539/1‑149 (MQ=255)                                   ccTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCgg                                                                                              <  5:325547/149‑1 (MQ=255)                                       gTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGat                                                                                            <  8:164289/147‑1 (MQ=255)                                              cccTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAg                                                                                   <  3:94821/149‑1 (MQ=255)                                                cTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGcc                                                                                 >  1:307442/1‑149 (MQ=255)                                                    gggCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCGGTATGCCGATGatccgcgacatgggcttcgacgtcctgtacttcccgcccatccaccccatcggcatgcagca                                                                             <  5:259187‑M1/149‑63 (MQ=255)                                                        tGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGatccgcgacatgggcttcgacgtcctgtacttcccgcccatccaccccatcggcat                                                                                   >  5:10532‑M1/1‑83 (MQ=255)                                                        tGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGatccgcgacatgggcttcgacgtcctgtacttcccgcccatccaccccatcggcat                                                                                   <  6:10532‑M1/139‑57 (MQ=255)                                                            aaTGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGt                                                                           >  2:219243/1‑143 (MQ=255)                                                            aaTGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGt                                                                           <  1:219243/143‑1 (MQ=255)                                                             aTGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTc                                                                             <  2:353047/140‑1 (MQ=255)                                                             aTGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTc                                                                             >  1:353047/1‑140 (MQ=255)                                                              tGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGTTGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCAcgtcg                                                                   <  8:231689/149‑1 (MQ=255)                                                              tGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCAcgtcg                                                                   <  6:204950/149‑1 (MQ=255)                                                                  aTACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCACTTGAGATGCTGCATGCCCATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGAGGATCATCGGCAGCCGTTCGTTCACGACGTTg                                                                >  4:35059/1‑148 (MQ=255)                                                                   tACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGaa                                                              <  6:305469/149‑1 (MQ=255)                                                                                      ccGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCggg                                           >  8:233180/1‑149 (MQ=255)                                                                                                cTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCgg                                    <  1:148743/146‑1 (MQ=255)                                                                                                cTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCgg                                    >  2:148743/1‑146 (MQ=255)                                                                                                cTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTaa                                 >  8:30959/1‑149 (MQ=255)                                                                                                         gttggtGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGcgcg                        <  7:233180/149‑1 (MQ=255)                                                                                                          ttgttgCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCgg                                            >  5:153379/1‑128 (MQ=255)                                                                                                          ttgttgCGGCCCTTGCGAAGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCgg                                            <  6:153379/128‑1 (MQ=255)                                                                                                             ttgCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGaa                    >  8:289565/1‑149 (MQ=255)                                                                                                               gCGGCCCTTGCGATGCTGCATGAAAAACGGGTGGATGGGCGGGAAATACAGGACGTCGAACCCAATATCGCGGATAATCAGCAGACGTTCGTGCACTTCGTTGAAGCAGCCGTGACGCTGCGGGTCGTCGGAAATCGAGCGCGGGAACa                  >  7:227994/1‑149 (MQ=255)                                                                                                                        gCGATGCTGCATGCCGTTGGGGTGGTTGGGCGGGAATTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCTCGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACTGCTCGTAc          <  8:227994/148‑1 (MQ=255)                                                                                                                        gCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTAc          <  3:35059/148‑1 (MQ=255)                                                                                                                          gATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAg       >  7:64787/1‑149 (MQ=255)                                                                                                                            tgctgcATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATcatcggcataccgcatcgcaagggccgcaacaacgccctcaaggccgagccgggcgacccgggtagcccgtatgccattggcagccc     <  5:259187‑M2/149‑88 (MQ=255)                                                                                                                                 cATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGc  <  7:289565/147‑1 (MQ=255)                                                                                                                                  aTGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATcatcggcatgcagcatcgcaagggccgcaacaacgccctcaaggccgagccgggcgacccgggtagcccgtatgccattggca         <  6:10532‑M2/139‑84 (MQ=255)                                                                                                                                  aTGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATcatcggcatgcagcatcgcaagggccgcaacaacgccctcaaggccgagccgggcgacccgggtagcccgtatgccattggca         >  5:10532‑M2/1‑56 (MQ=255)                                                                                                                                          |                                                                                                                                          AAGTCATCGCGGCTGCCCAGTTGCGGGTGAATCGCCTCGTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGC  >  NC_002947/4584691‑4584965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.