New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4584828	33 (0.580)	3 (0.060)	3/244	NT	8.3%	coding (756/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4584875	35 (0.660)					coding (709/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

GTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGT  >  NC_002947/4584729‑4585016                                                                                                                                                   |                                                                                                                                              gTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGat                                                                                                                                               <  8:164289/147‑1 (MQ=255)        cccTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAg                                                                                                                                      <  3:94821/149‑1 (MQ=255)          cTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGcc                                                                                                                                    >  1:307442/1‑149 (MQ=255)                      aaTGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGt                                                                                                                              <  1:219243/143‑1 (MQ=255)                      aaTGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGt                                                                                                                              >  2:219243/1‑143 (MQ=255)                       aTGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTc                                                                                                                                >  1:353047/1‑140 (MQ=255)                       aTGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTc                                                                                                                                <  2:353047/140‑1 (MQ=255)                        tGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGTTGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCAcgtcg                                                                                                                      <  8:231689/149‑1 (MQ=255)                        tGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCAcgtcg                                                                                                                      <  6:204950/149‑1 (MQ=255)                            aTACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCACTTGAGATGCTGCATGCCCATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGAGGATCATCGGCAGCCGTTCGTTCACGACGTTg                                                                                                                   >  4:35059/1‑148 (MQ=255)                             tACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGaa                                                                                                                 <  6:305469/149‑1 (MQ=255)                                                ccGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCggg                                                                                              >  8:233180/1‑149 (MQ=255)                                                          cTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCgg                                                                                       >  2:148743/1‑146 (MQ=255)                                                          cTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCgg                                                                                       <  1:148743/146‑1 (MQ=255)                                                          cTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTaa                                                                                    >  8:30959/1‑149 (MQ=255)                                                                   gttggtGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGcgcg                                                                           <  7:233180/149‑1 (MQ=255)                                                                    ttgttgCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCgg                                                                                               >  5:153379/1‑128 (MQ=255)                                                                    ttgttgCGGCCCTTGCGAAGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCgg                                                                                               <  6:153379/128‑1 (MQ=255)                                                                       ttgCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGaa                                                                       >  8:289565/1‑149 (MQ=255)                                                                         gCGGCCCTTGCGATGCTGCATGAAAAACGGGTGGATGGGCGGGAAATACAGGACGTCGAACCCAATATCGCGGATAATCAGCAGACGTTCGTGCACTTCGTTGAAGCAGCCGTGACGCTGCGGGTCGTCGGAAATCGAGCGCGGGAACa                                                                     >  7:227994/1‑149 (MQ=255)                                                                                  gCGATGCTGCATGCCGTTGGGGTGGTTGGGCGGGAATTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCTCGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACTGCTCGTAc                                                             <  8:227994/148‑1 (MQ=255)                                                                                  gCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTAc                                                             <  3:35059/148‑1 (MQ=255)                                                                                    gATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAg                                                          >  7:64787/1‑149 (MQ=255)                                                                                      tgctgcATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATcatcggcataccgcatcgcaagggccgcaacaacgccctcaaggccgagccgggcgacccgggtagcccgtatgccattggcagccc                                                        <  5:259187‑M2/149‑88 (MQ=255)                                                                                           cATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGc                                                     <  7:289565/147‑1 (MQ=255)                                                                                            aTGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATcatcggcatgcagcatcgcaagggccgcaacaacgccctcaaggccgagccgggcgacccgggtagcccgtatgccattggca                                                            >  5:10532‑M2/1‑56 (MQ=255)                                                                                            aTGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATcatcggcatgcagcatcgcaagggccgcaacaacgccctcaaggccgagccgggcgacccgggtagcccgtatgccattggca                                                            <  6:10532‑M2/139‑84 (MQ=255)                                                                                                      ggTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGcc                                        >  2:113452/1‑149 (MQ=255)                                                                                                                cGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGa                              <  7:30959/149‑1 (MQ=255)                                                                                                                         cAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAgg                      <  8:64787/148‑1 (MQ=255)                                                                                                                         cAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAgg                      <  2:307442/148‑1 (MQ=255)                                                                                                                          aGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAgggg                    >  1:106893/1‑149 (MQ=255)                                                                                                                            gACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAggggg                   >  4:40156/1‑148 (MQ=255)                                                                                                                               gTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAAt               >  5:238309/1‑149 (MQ=255)                                                                                                                                  gAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCa             <  2:106893/148‑1 (MQ=255)                                                                                                                                  gAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAg            >  1:171786/1‑149 (MQ=255)                                                                                                                                         aTGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAggg                     >  3:260315/1‑133 (MQ=255)                                                                                                                                         aTGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAggg                     <  4:260315/133‑1 (MQ=255)                                                                                                                                             cgcgGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTAc                                                             >  8:198238/1‑89 (MQ=255)                                                                                                                                             cgcgGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTAc                                                             <  7:198238/89‑1 (MQ=255)                                                                                                                                              gcgGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGt  >  4:347052/1‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                              GTGGCCGCCCTCCGGGCTGCCAATGGCATACGGGCTACCCGGGTCGCCCGGCTCGGCCTTGAGGGCGTTGTTGCGGCCCTTGCGATGCTGCATGCCGATGGGGTGGATGGGCGGGAAGTACAGGACGTCGAAGCCCATGTCGCGGATCATCGGCAGCCGTTCGTGCACGTCGTTGAAGGTGCCGTGACGCTGCGGGTCGTCGGTAATCGAGCGCGGGAACAGCTCGTACCAGCTGGCGAACAATGCGGCCGGGCGGTCGACATCAAGGGGGAAATCAGGACTGCGGGT  >  NC_002947/4584729‑4585016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.