New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4833596 = | 52 (0.920) | 4 (0.080) | 4/242 | NT | 8.7% | coding (459/801 nt) | PP_4246 | substrate‑binding protein |
? | NC_002947 | 4833641 = | 36 (0.680) | coding (414/801 nt) | PP_4246 | substrate‑binding protein |
CGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGG > NC_002947/4833450‑4833735 | gcaccgacatggcgattttcgagaacccacaatggggctgggagcagattgcccatcaggccgtggacatgggcctggaagatgccgaagtgttcgtcgcccgcaaggcaaacggcaatgatccgcattatttcgatgacctgcgcgg < 3:56891‑M1/2‑1 (MQ=255) gTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGc > 8:226552/1‑148 (MQ=255) cGCTGAGGTAGGAACACGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTgg < 7:63747/149‑1 (MQ=255) cTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTa < 5:171887/149‑1 (MQ=255) tGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAg < 6:42767/149‑1 (MQ=255) aGGTAGGAACGCGTGACCAGGGCAATCTCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGcc < 7:255228/149‑1 (MQ=255) aGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGcc > 5:349489/1‑149 (MQ=255) ggTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCg > 1:146574/1‑149 (MQ=255) tAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGtt < 7:79513/149‑1 (MQ=255) aGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGtt > 1:40828/1‑148 (MQ=255) gAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGaa > 5:136643/1‑149 (MQ=255) acccacaatggggctgggagcagattgcccatcaggccgtggacatgggcctggaagatgccgaagtgttcgtcgcccgcaaggcaaacggcaatgatccgcattatttcgatgacctgcgcGGCAAACGCGTAGTGGTAGCCGTTGaa < 2:189307‑M1/27‑1 (MQ=255) gcgTGACCAGGGCAATCTCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAg < 4:287644/149‑1 (MQ=255) gcctGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAg < 2:146574/146‑1 (MQ=255) gTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGc > 3:47574/1‑149 (MQ=255) aCCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAg < 6:349489/149‑1 (MQ=255) cAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGc < 2:40828/149‑1 (MQ=255) aGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCg > 8:77820/1‑149 (MQ=255) gggCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGt > 5:172986/1‑149 (MQ=255) cAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTg < 4:144117/149‑1 (MQ=255) gagcagattgcccatcaggccgtggacatgggcctggaagatgccgaagtgttcgtcgcccgcaaggcaaacggcaatgatccgcattatttcgatgacctgcgcGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGc > 3:97571‑M1/106‑149 (MQ=255) agcagattgcccatcaggccgtggacatgggcctggaagatgccgaagtgttcgtcgcccgcaaggcaaacggcaatgatccgcattatttcgatgacctgcgcGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGcc > 4:56891‑M1/105‑149 (MQ=255) tatCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCcg > 5:74996/1‑149 (MQ=255) gcagattgcccatcaggccgtggacatgggcctggaagatgccgaagtgttcgtcgcccgcaaggcaaacggcaatgatccgcattatttcgatgacctgcgcGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCcg > 1:189307‑M1/104‑149 (MQ=255) ggCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCa < 7:103285/149‑1 (MQ=255) ccggccTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATc < 6:172986/149‑1 (MQ=255) ccTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGaa > 8:20509/1‑148 (MQ=255) ccTGCACCATCAGCAGGTTGCTGGCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGaaa < 7:226552/149‑1 (MQ=255) gCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAaataa > 5:225289/1‑149 (MQ=255) cACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAgg < 1:181049/136‑1 (MQ=255) cACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAgg > 2:181049/1‑136 (MQ=255) cACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAaataat > 4:71388/1‑149 (MQ=255) aTCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTgg < 8:128313/82‑1 (MQ=255) aTCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTGGAAGCTgg > 7:128313/1‑82 (MQ=255) cagGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCAt > 6:190037/1‑149 (MQ=255) gTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGc > 4:181969/1‑149 (MQ=255) gTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGc < 2:43265/149‑1 (MQ=255) tCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGttt < 7:20509/147‑1 (MQ=255) gTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAg > 5:294667/1‑89 (MQ=255) gTCAGGGTTGCGGTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAg < 6:294667/89‑1 (MQ=255) ggTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAaca > 4:236200/1‑149 (MQ=255) ggTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAaca > 5:149205/1‑149 (MQ=255) ggTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAaca > 6:214143/1‑149 (MQ=255) cGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCg < 3:236200/149‑1 (MQ=255) cGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCg < 3:71388/149‑1 (MQ=255) cGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCg < 5:214143/149‑1 (MQ=255) gTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGaa < 1:170771/141‑1 (MQ=255) gTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGaa > 2:170771/1‑141 (MQ=255) ttGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGc < 5:190037/149‑1 (MQ=255) gTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCa > 2:32144/1‑148 (MQ=255) tGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCtt > 4:136803/1‑149 (MQ=255) tCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTcc < 6:225289/149‑1 (MQ=255) cTTGCGCAGGTAGTCCGGGTCAGAGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAACGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCa < 4:47574/149‑1 (MQ=255) tCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCAc > 6:75406/1‑149 (MQ=255) gggTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGc > 7:299622/1‑149 (MQ=255) ggTCAGCGTTTTATGTTGCAAAAGCGTATTTGTATCCGTTTAACAATGCCATGCGTTTTCCGGGCAGGTCATCGTAATAATTCGGATCATTTGCGTTTGCCTTGCGGGCGTAGAAAACCTTCGGCATCTTCCAGGCCCATGTCCACGGc < 1:32144/149‑1 (MQ=255) ggTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGcc < 6:149205/149‑1 (MQ=255) aGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGAt > 8:242323/1‑149 (MQ=255) gTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATggg > 6:79737/1‑149 (MQ=255) gTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATggg < 6:136643/149‑1 (MQ=255) | CGTGCCAGGAAATCGCTGAGGTAGGAACGCGTGACCAGGGCAATATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGG > NC_002947/4833450‑4833735 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |