New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4833596 =	52 (0.920)	4 (0.080)	4/242	NT	8.7%	coding (459/801 nt)	PP_4246	substrate‑binding protein
	?	NC_002947	4833641 =	36 (0.680)					coding (414/801 nt)	PP_4246	substrate‑binding protein

TATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTGGGTTCTCGAAAATCGCCATGTCGGTGC  >  NC_002947/4833493‑4833786                                                                                                                                                     |                                                                                                                                                   tatCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCcg                                                                                                                                                    >  5:74996/1‑149 (MQ=255) gcagattgcccatcaggccgtggacatgggcctggaagatgccgaagtgttcgtcgcccgcaaggcaaacggcaatgatccgcattatttcgatgacctgcgcGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCcg                                                                                                                                                    >  1:189307‑M1/104‑149 (MQ=255)     ggCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCa                                                                                                                                                <  7:103285/149‑1 (MQ=255)            ccggccTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATc                                                                                                                                         <  6:172986/149‑1 (MQ=255)                ccTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGaa                                                                                                                                      >  8:20509/1‑148 (MQ=255)                ccTGCACCATCAGCAGGTTGCTGGCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGaaa                                                                                                                                     <  7:226552/149‑1 (MQ=255)                   gCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAaataa                                                                                                                                  >  5:225289/1‑149 (MQ=255)                    cACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAgg                                                                                                                                              <  1:181049/136‑1 (MQ=255)                    cACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAgg                                                                                                                                              >  2:181049/1‑136 (MQ=255)                    cACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAaataat                                                                                                                                 >  4:71388/1‑149 (MQ=255)                             cagGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCAt                                                                                                                        >  6:190037/1‑149 (MQ=255)                                gTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGc                                                                                                                     <  2:43265/149‑1 (MQ=255)                                gTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGc                                                                                                                     >  4:181969/1‑149 (MQ=255)                                       tCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGttt                                                                                                                <  7:20509/147‑1 (MQ=255)                                                        ggTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAaca                                                                                             >  6:214143/1‑149 (MQ=255)                                                        ggTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAaca                                                                                             >  4:236200/1‑149 (MQ=255)                                                        ggTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAaca                                                                                             >  5:149205/1‑149 (MQ=255)                                                             cGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCg                                                                                       <  3:236200/149‑1 (MQ=255)                                                             cGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCg                                                                                       <  3:71388/149‑1 (MQ=255)                                                             cGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCg                                                                                       <  5:214143/149‑1 (MQ=255)                                                              gTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGaa                                                                                               >  2:170771/1‑141 (MQ=255)                                                              gTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGaa                                                                                               <  1:170771/141‑1 (MQ=255)                                                               ttGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGc                                                                                     <  5:190037/149‑1 (MQ=255)                                                                 gTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCa                                                                                    >  2:32144/1‑148 (MQ=255)                                                                    tGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCtt                                                                                >  4:136803/1‑149 (MQ=255)                                                                      tCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTcc                                                                              <  6:225289/149‑1 (MQ=255)                                                                       cTTGCGCAGGTAGTCCGGGTCAGAGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAACGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCa                                                                             <  4:47574/149‑1 (MQ=255)                                                                                    tCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCAc                                                                >  6:75406/1‑149 (MQ=255)                                                                                       gggTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGc                                                             >  7:299622/1‑149 (MQ=255)                                                                                        ggTCAGCGTTTTATGTTGCAAAAGCGTATTTGTATCCGTTTAACAATGCCATGCGTTTTCCGGGCAGGTCATCGTAATAATTCGGATCATTTGCGTTTGCCTTGCGGGCGTAGAAAACCTTCGGCATCTTCCAGGCCCATGTCCACGGc                                                             <  1:32144/149‑1 (MQ=255)                                                                                        ggTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGcc                                                            <  6:149205/149‑1 (MQ=255)                                                                                            aGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGAt                                                        >  8:242323/1‑149 (MQ=255)                                                                                               gTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATggg                                                     <  6:136643/149‑1 (MQ=255)                                                                                               gTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATggg                                                     >  6:79737/1‑149 (MQ=255)                                                                                                       cggcaaacgcctggccttgttcaacggctaccactacgcgtttgccGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGc                                             >  1:189307‑M2/47‑149 (MQ=255)                                                                                                        ggcaaacgcctggccttgttcaacggctaccactacgcgtttgccGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCt                                            >  4:56891‑M2/46‑149 (MQ=255)                                                                                                         gcaaacgcctggccttgttcaacggctaccactacgcgtttgccGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTc                                           >  3:97571‑M2/45‑149 (MQ=255)                                                                                                         GCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGc                                             >  5:79737‑M1/1‑147 (MQ=255)                                                                                                           AAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGc                                             >  3:160839‑M1/1‑145 (MQ=255)                                                                                                           AAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGc                                             <  4:160839‑M1/145‑1 (MQ=255)                                                                                                                CGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGccc                                    >  7:242323‑M1/1‑149 (MQ=255)                                                                                                                     tGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATtg                               <  3:181969/149‑1 (MQ=255)                                                                                                                         aGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTggg                           >  7:220298/1‑149 (MQ=255)                                                                                                                          ttcaacggctaccactacgcgtttgccGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTGGGt                          <  2:189307‑M2/122‑1 (MQ=255)                                                                                                                           ccGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTGGGtt                         >  5:87464/1‑149 (MQ=255)                                                                                                                             gTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCATGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTGGGTtc                        >  6:260159/1‑148 (MQ=255)                                                                                                                                gAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTGGGTTCTCg                     >  2:377/1‑148 (MQ=255)                                                                                                                                           ggCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTgg                            <  6:43909/130‑1 (MQ=255)                                                                                                                                           ggCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTgg                            >  5:43909/1‑130 (MQ=255)                                                                                                                                                   ccGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTGGGTTCTCGAAAATCGCCATGTCGGTGc  <  3:56891‑M2/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TATCGGCGCGGCCGGCCTGCACCATCAGCAGGTTGCTGTCGTGGGAGTAGGTCAGGGTTGCGTTGTATGTCTTGCGCAGGTAGTCCGGGTCAGCGTTGAAGCTGGCAAACGCGTAGTGGTAGCCGTTGAACAAGGCCAGGCGTTTGCCGCGCAGGTCATCGAAATAATGCGGATCATTGCCGTTTGCCTTGCGGGCGACGAACA‑CTTCGGCATCTTCCAGGCCCATGTCCACGGCCTGATGGGCAATCTGCTCCCAGCCCCATTGTGGGTTCTCGAAAATCGCCATGTCGGTGC  >  NC_002947/4833493‑4833786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.