New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5105003	37 (0.650)	5 (0.100)	4/240	NT	12.0%	intergenic (+26/+88)	yhhS/ydiJ	carbohydrate efflux transporter/putative oxidoreductase
	?	NC_002947	= 5105048	39 (0.750)					intergenic (+71/+43)	yhhS/ydiJ	carbohydrate efflux transporter/putative oxidoreductase

GGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTC  >  NC_002947/5104859‑5105148                                                                                                                                                 |                                                                                                                                                   ggTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAAcc                                                                                                                                                <  5:329955/149‑1 (MQ=255)             cTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTgg                                                                                                                                   >  8:27901/1‑149 (MQ=255)                 gATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGt                                                                                                                                <  4:149138/148‑1 (MQ=255)                           ttCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCa                                                                                                                             >  2:267810/1‑141 (MQ=255)                           ttCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCa                                                                                                                             <  1:267810/141‑1 (MQ=255)                           ttCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATccc                                                                                                                      <  5:353644/148‑1 (MQ=255)                            tCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATccccc                                                                                                                    >  7:189203/1‑149 (MQ=255)                               cggcggCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCCTGGCGTGCACGATCCCCCg                                                                                                                   >  2:229142/1‑148 (MQ=255)                               cggcggCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCCTGGCGTGCACGATCCCCCg                                                                                                                   >  8:82457/1‑148 (MQ=255)                                    gcTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGc                                                                                                            >  2:59682/1‑149 (MQ=255)                                      tGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTgaacccgctcctacgggggatcgtgcacgccaggggggcgg                                                                                                           >  5:65403‑M1/1‑108 (MQ=255)                                        cGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCgg                                                                                                          <  1:229142/148‑1 (MQ=255)                                        cGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCgg                                                                                                          <  7:82457/148‑1 (MQ=255)                                          gCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTc                                                                                                      <  6:59152/149‑1 (MQ=255)                                             gCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacc                                                                                                   >  7:27901‑M2/1‑146 (MQ=255)                                                tGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTgaacccgctcctacgggggatcgtgcacgccaggggggcggggttacccgc                                                                                                 <  6:65403‑M1/149‑52 (MQ=255)                                                 gCGGGTGTGGGTAGAGCCTCTATTTGTACCTCCACGGGCGTAGGGACCGGGACCGTACAACAGCAGCCTGAAACCCGCTGCCGGCCTCTTCGCGGGTgaacccgctcctacgggggatcgtgcacgccaggggggcggggttacccgcg                                                                                                <  8:151704‑M1/149‑53 (MQ=255)                                                      ttGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAggg                                                                                          <  1:265035/149‑1 (MQ=255)                                                                gCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAag                                                                                  >  2:214369/1‑147 (MQ=255)                                                                 ccTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTgaacccgctcctacgggggatcgtgcacgccaggggggcggggttacccgcg                                                                                                >  1:187049‑M1/1‑81 (MQ=255)                                                                 ccTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTgaacccgctcctacgggggatcgtgcacgccaggggggcggggttacccgcg                                                                                                <  2:187049‑M1/133‑53 (MQ=255)                                                                 ccTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagcag                                                                               >  3:39301/1‑149 (MQ=255)                                                                    ctATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGccc                                                                            >  2:319086/1‑149 (MQ=255)                                                                       tttGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGcccc                                                                           <  8:189203/147‑1 (MQ=255)                                                                       tttGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGccc                                                                            <  4:39301/146‑1 (MQ=255)                                                                       tttGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCGGCGGTGGAGGTTCGCCCGTAGGAGCGGGAAGCCCCGCGAAGGGCTGCAGAGCGGccccc                                                                          >  5:369471/1‑148 (MQ=255)                                                                          gTACCGCCAAGGGCGTAGGGACAGCGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCTTTGCAGcccttcgc                                                                       <  1:198128/148‑6 (MQ=39)                                                                             ccGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGcc                                                                   >  3:296657/1‑149 (MQ=255)                                                                               gCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCt                                                                 <  1:319086/149‑1 (MQ=255)                                                                                  aaGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCTCTGGCGTGCACGATCCCCCGAAGGAGCGGGTTCACCCGCGAAgg                                                                                           <  1:73804/120‑1 (MQ=255)                                                                                  aaGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGAAGGAGCGGGTTCACCCGCGAAgg                                                                                           >  2:73804/1‑120 (MQ=255)                                                                                   aGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAAc                                                             <  1:59682/149‑1 (MQ=255)                                                                                                agggacCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGc                                                <  1:214369/149‑1 (MQ=255)                                                                                                          caacaGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCaa                                       >  2:98578/1‑148 (MQ=255)                                                                                                           aacaGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCGCCCGCGACGGGCTGCAAAGCAGCCCCCAACGGCCCTGCACCTCCGCGCTGAGCGGACTGCAcca                                     >  7:197908/1‑149 (MQ=38)                                                                                                             caGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGGGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGCCGGGCTGCCAAGCCGCCCCCAAAGGCCCTGCACCGCAGCGCGGAGCGTCCTGCCAcacc                                   >  2:210563/1‑149 (MQ=38)                                                                                                                       aaaGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGc                          <  4:296657/148‑1 (MQ=255)                                                                                                                                 ccGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCTAAGCAGCCCCCAAAGGCCCTGAACCTCa                                                         >  2:202006/1‑107 (MQ=255)                                                                                                                                 ccGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCTAAGCAGCCCCCAAAGGCCCTGAACCTCa                                                         <  1:202006/107‑1 (MQ=255)                                                                                                                                      ctctTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCGCGTAGGAGCGGGTTCACCCGCGACGGGCTGCAAAGCAGCCCCCAAAGGCACAGAACCTCAGCGCTGAGCGTACGGCAACACCACCTCAAGACGGAGACGCATCATcc          >  8:315545/1‑149 (MQ=38)                                                                                                                                      ctctTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACGCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACGGCAACACCACCTCAAGCGGGGGACGCATcgt            >  4:48735/1‑145 (MQ=255)                                                                                                                                         ttCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCggg                       <  5:95893/133‑1 (MQ=255)                                                                                                                                         ttCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCggg                       >  6:95893/1‑133 (MQ=255)                                                                                                                                           cgcgGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacccgcgaagaggccggcagcgggtttcaggctgctgttgtacggtcccggtccctacgcccgtggaggtacaaatagaggctctacccacacccgc     <  8:151704‑M2/149‑98 (MQ=255)                                                                                                                                           cgcgGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacccgcgaagaggccggcagcggctttcaggcttctgttgtacggtccctgtccctacgcccttggcggtacaaatagagg                     >  1:187049‑M2/1‑52 (MQ=255)                                                                                                                                           cgcgGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacccgcgaagaggccggcagcggctttcaggcttctgttgtacggtccctgtccctacgcccttggcggtacaaatagagg                     <  2:187049‑M2/133‑82 (MQ=255)                                                                                                                                            gcgGGTAACCCCG‑CCCCCCTGGCGTGCCCGCTCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCAGCAAAGCAGCCCCCAAAGGCCCTGCACCTCAGCGCAGAGCGTACAGCAACCCCACCTCCAACGGGTGACGCATCTACCGCCCgg    >  2:363867/1‑149 (MQ=37)                                                                                                                                            gcgGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacccgcgaagaggccggcagcggctttcaggcttctgttgtacggtccctgtccctacgcccttggcggtacaaatagaggctcaacaccaacccgca    <  6:65403‑M2/149‑99 (MQ=255)                                                                                                                                              gggTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGACGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCAGAGCGTACTGGAACACCACCTAAACGGGGTGACGCATCTTCCGCACGGt   >  3:54521/1‑148 (MQ=38)                                                                                                                                               ggTgaacccgctcctacgggggatcgtgcacgccaggggggcggggttacccgcgaagaggccggcagcggctttcaggcttctgttgtacggtccctgtccctacgcccttggcggtacaaatagaggctcaacaccaacccgcacgc  >  7:27901‑M1/1‑3 (MQ=255)                                                                                                                                                 |                                                                                                                                                   GGTTCGGCTTTGCTTCGATGTTTCTGTTCGCGGCGGCTGCGGCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCG‑CCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTC  >  NC_002947/5104859‑5105148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.