New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5105003	37 (0.650)	5 (0.100)	4/240	NT	12.0%	intergenic (+26/+88)	yhhS/ydiJ	carbohydrate efflux transporter/putative oxidoreductase
	?	NC_002947	= 5105048	39 (0.750)					intergenic (+71/+43)	yhhS/ydiJ	carbohydrate efflux transporter/putative oxidoreductase

GCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCGGTT  >  NC_002947/5104900‑5105184                                                                                                                                                     |                                                                                                                                          gCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTc                                                                                                                                           <  6:59152/149‑1 (MQ=255)    gCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacc                                                                                                                                        >  7:27901‑M2/1‑146 (MQ=255)             ttGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAggg                                                                                                                               <  1:265035/149‑1 (MQ=255)                       gCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAag                                                                                                                       >  2:214369/1‑147 (MQ=255)                        ccTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagcag                                                                                                                    >  3:39301/1‑149 (MQ=255)                           ctATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGccc                                                                                                                 >  2:319086/1‑149 (MQ=255)                              tttGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGcccc                                                                                                                <  8:189203/147‑1 (MQ=255)                              tttGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGccc                                                                                                                 <  4:39301/146‑1 (MQ=255)                              tttGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCGGCGGTGGAGGTTCGCCCGTAGGAGCGGGAAGCCCCGCGAAGGGCTGCAGAGCGGccccc                                                                                                               >  5:369471/1‑148 (MQ=255)                                 gTACCGCCAAGGGCGTAGGGACAGCGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCTTTGCAGcccttcgc                                                                                                            <  1:198128/148‑6 (MQ=39)                                    ccGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGcc                                                                                                       >  3:296657/1‑149 (MQ=255)                                      gCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCt                                                                                                     <  1:319086/149‑1 (MQ=255)                                         aaGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCTCTGGCGTGCACGATCCCCCGAAGGAGCGGGTTCACCCGCGAAgg                                                                                                                                <  1:73804/120‑1 (MQ=255)                                         aaGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGAAGGAGCGGGTTCACCCGCGAAgg                                                                                                                                >  2:73804/1‑120 (MQ=255)                                          aGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAAc                                                                                                 <  1:59682/149‑1 (MQ=255)                                                       agggacCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGc                                                                                    <  1:214369/149‑1 (MQ=255)                                                                 caacaGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCaa                                                                           >  2:98578/1‑148 (MQ=255)                                                                  aacaGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCGCCCGCGACGGGCTGCAAAGCAGCCCCC‑AACGGCCCTGCACCTCCGCGCTGAGCGGACTGCAcca                                                                         >  7:197908/1‑149 (MQ=38)                                                                    caGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGGGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGCCGGGCTGCCAAGCCGCCCCC‑AAAGGCCCTGCACCGCAGCGCGGAGCGTCCTGCCAcacc                                                                       >  2:210563/1‑149 (MQ=38)                                                                              aaaGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGc                                                              <  4:296657/148‑1 (MQ=255)                                                                                        ccGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCTAAGCAGCCCCC‑AAAGGCCCTGAACCTCa                                                                                             >  2:202006/1‑107 (MQ=255)                                                                                        ccGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCTAAGCAGCCCCC‑AAAGGCCCTGAACCTCa                                                                                             <  1:202006/107‑1 (MQ=255)                                                                                             ctctTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCGCGTAGGAGCGGGTTCACCCGCGACGGGCTGCAAAGCAGCCCCC‑AAAGGCACAGAACCTCAGCGCTGAGCGTACGGCAACACCACCTCAAGACGGAGACGCATCATcc                                              >  8:315545/1‑149 (MQ=38)                                                                                             ctctTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACGCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACGGCAACACCACCTCAAGCGGGGGACGCATcgt                                                >  4:48735/1‑145 (MQ=255)                                                                                                ttCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCggg                                                           >  6:95893/1‑133 (MQ=255)                                                                                                ttCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCggg                                                           <  5:95893/133‑1 (MQ=255)                                                                                                  cgcgGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacccgcgaagaggccggcagcgggtttcaggctgctgttgtacggtcccggtccctacgcccgtggaggtacaaatagaggctctacccacacccgc                                          <  8:151704‑M2/149‑98 (MQ=255)                                                                                                  cgcgGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacccgcgaagaggccggcagcggctttcaggcttctgttgtacggtccctgtccctacgcccttggcggtacaaatagagg                                                          >  1:187049‑M2/1‑52 (MQ=255)                                                                                                  cgcgGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacccgcgaagaggccggcagcggctttcaggcttctgttgtacggtccctgtccctacgcccttggcggtacaaatagagg                                                          <  2:187049‑M2/133‑82 (MQ=255)                                                                                                   gcgGGTAACCCCGCCCCCCTGGCGTGCCCGCTCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCAGCAAAGCAGCCCCC‑AAAGGCCCTGCACCTCAGCGCAGAGCGTACAGCAACCCCACCTCCAACGGGTGACGCATCTACCGCCCgg                                        >  2:363867/1‑149 (MQ=37)                                                                                                   gcgGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacccgcgaagaggccggcagcggctttcaggcttctgttgtacggtccctgtccctacgcccttggcggtacaaatagaggctcaacaccaacccgca                                         <  6:65403‑M2/149‑99 (MQ=255)                                                                                                     gggTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGACGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCAGAGCGTACTGGAACACCACCTAAACGGGGTGACGCATCTTCCGCACGGt                                       >  3:54521/1‑148 (MQ=38)                                                                                                            cccGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGAc                                                       <  3:199344/125‑1 (MQ=255)                                                                                                            cccGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGAc                                                       >  4:199344/1‑125 (MQ=255)                                                                                                            cccGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCACAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCt                               >  1:355989/1‑149 (MQ=255)                                                                                                             ccGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCacccgcgaagaggccggcagcggctttcaggcttctgttgtacggtccctgtccctacgcccttggcggtacaaatagaggctcaacaccaacccgcacgctgccgca                               >  5:65403‑M2/1‑41 (MQ=255)                                                                                                                  ccccTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCt                         >  3:335152/1‑149 (MQ=255)                                                                                                                   cccTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTg                        <  1:98578/149‑1 (MQ=255)                                                                                                                    ccTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTgg                       <  7:315545/149‑1 (MQ=255)                                                                                                                        gCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTGATGCGCTTGACCTGGCTAc                   <  1:210563/149‑1 (MQ=255)                                                                                                                              aCGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCAc              >  3:244957/1‑148 (MQ=255)                                                                                                                                gATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCCAAAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACg             >  1:271211/1‑148 (MQ=255)                                                                                                                                   cccccGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACCGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATaa        >  5:55396/1‑149 (MQ=255)                                                                                                                                     cccGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAAcc      >  3:196262/1‑149 (MQ=255)                                                                                                                                     cccGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAAcc      >  6:193909/1‑149 (MQ=255)                                                                                                                                      ccGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCg     >  6:350754/1‑149 (MQ=255)                                                                                                                                         tAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCGGtt  <  4:244957/149‑1 (MQ=255)                                                                                                                                         tAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCGGtt  <  8:197908/149‑1 (MQ=255)                                                                                                                                         tAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCGGtt  <  2:355989/149‑1 (MQ=255)                                                                                                                                                  gTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATaa        <  7:113989/134‑1 (MQ=255)                                                                                                                                                  gTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATaa        >  8:113989/1‑134 (MQ=255)                                                                                                                                                     |                                                                                                                                          GCAGCGTGCGGGTTGGTGTTGAGCCTCTATTTGTACCGCCAAGGGCGTAGGGACAGGGACCGTACAACAGAAGCCTGAAAGCCGCTGCCGGCCTCTTCGCGGGTAACCCCGCCCCCCTGGCGTGCACGATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCC‑AAAGGCCCTGAACCTCAGCGCTGAGCGTACTGCAACACCACCTCAAGCGGGTGACGCATCTTCCGCTCGGTCATGCGCTTGACCTGGCTACGGCACGAATAACCGGTT  >  NC_002947/5104900‑5105184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.