| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5461198 | 51 (0.900) | 3 (0.050) | 3/254 | NT | 6.1% | coding (138/1317 nt) | PP_4798 | membrane‑bound lytic murein transglycosylase |
| ? | NC_002947 | = 5461230 | 43 (0.780) | coding (170/1317 nt) | PP_4798 | membrane‑bound lytic murein transglycosylase | |||||
CATGCTCTTCCGTCTTATCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCC > NC_002947/5461060‑5461346 | cATGCTCTTCCGTCTTATCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTg < 3:314905/148‑1 (MQ=255) aTGCTCTTCCGTCTTATCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGcc > 3:226154/1‑149 (MQ=255) aTGCTCTTCCGTCTTATCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGcc < 3:70877/149‑1 (MQ=255) aTGCTCTTCCGTCTTATCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGcc > 4:70877/1‑149 (MQ=255) ttCCGTCTTATCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGgc < 6:677/147‑1 (MQ=255) cGTCTTATCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCaa < 4:251729/148‑1 (MQ=255) aTCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGa > 2:49347/1‑149 (MQ=255) aTCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGa > 7:266514/1‑149 (MQ=255) tCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGAc > 3:17571/1‑149 (MQ=255) ccccGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGt > 3:78149/1‑149 (MQ=255) cccGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGt > 3:123775/1‑148 (MQ=255) cGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAg < 8:266514/149‑1 (MQ=255) cGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAg < 8:337081/149‑1 (MQ=255) gCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGc > 1:49347‑M2/1‑148 (MQ=255) gggAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGctgacgtcgggcgttgcgccgggcacggtcaccacg > 8:59562‑M1/1‑113 (MQ=255) aaaCCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGctgacgtcgggcgttgcgccgggcacggtcaccacggga < 7:59562‑M1/149‑40 (MQ=255) aCCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACAt < 3:64198/149‑1 (MQ=255) cccGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATc < 4:78149/149‑1 (MQ=255) cGCCAGCTGATCGCGGCCTCCAGCCTCATCCTGCTCCTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGctgacggcgggcgttgcgccgggcacggtcaccacgggattggg < 1:227465‑M1/149‑45 (MQ=255) cAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGAcc < 2:275373/108‑1 (MQ=255) cAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGAcc > 1:275373/1‑108 (MQ=255) cAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATc > 6:183727/1‑144 (MQ=255) cAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATc < 5:183727/144‑1 (MQ=255) tCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCa > 2:203425/1‑148 (MQ=255) gCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCtt < 6:308889/149‑1 (MQ=255) ccAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGcc > 4:299939/1‑149 (MQ=255) cAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGcc > 1:215051/1‑148 (MQ=255) cAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGACCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGcc > 7:241060/1‑148 (MQ=255) cTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGAGATCCAGCCCCTGCAAACCTTCGCCCAAt < 1:203425/149‑1 (MQ=255) cTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAAt < 2:215051/149‑1 (MQ=255) cTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCGGCCCAACCCCATCCCGTGGTGACCGTGCCCGGCGCACCGCCCGACGACAGCACTGACATCCAGCCCCTGCCAACCTTCGCCCAAt > 2:149183/1‑149 (MQ=255) cATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATg < 4:17571/147‑1 (MQ=255) cTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCgg < 7:264273/148‑1 (MQ=255) gTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGACCGGCGCAACGCCCGACGTCAGCACTGCCATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCtt > 6:233650/1‑149 (MQ=255) cTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCTCTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTcc < 2:126896/146‑1 (MQ=255) cTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCTCTGACATACAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTcc > 1:126896/1‑146 (MQ=255) gtgCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAg > 4:239832/1‑149 (MQ=255) tgCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTg < 6:341976/112‑1 (MQ=255) tgCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTg > 5:341976/1‑112 (MQ=255) cGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGTAg > 2:14760/1‑149 (MQ=255) ccACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGc > 5:205183/1‑147 (MQ=255) aCCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCCT‑GTGACCGTGCCCGGCCCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGTCTTCCCCTAGCAGGCCCTGCAAGcc > 2:175494/1‑149 (MQ=255) ccgccgccgACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGcc < 4:123775/149‑1 (MQ=255) cgccgccgACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCg < 3:239832/149‑1 (MQ=255) cgcgCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGc < 3:299939/149‑1 (MQ=255) gcTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGcc > 2:122572/1‑147 (MQ=255) gcTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGa < 6:205183/149‑1 (MQ=255) gcTGCCGCTGACCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGa < 8:241060/149‑1 (MQ=255) tGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAg > 8:193748/1‑148 (MQ=255) ccGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCAc < 2:337256/149‑1 (MQ=255) gCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAg < 5:183368/140‑1 (MQ=255) gCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAg > 6:183368/1‑140 (MQ=255) caacccaaTCCCGTGGTGACCGTGCCCGGCGCGACGCGCGACGTGAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCACGCGGGCTTCCGCGAGCCGGCGCTGCAAGCCGGCATTTCGGAGAGCACCTTCGACCGCGCCtt > 8:232586/1‑149 (MQ=255) caacccaaTCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCtt > 7:331513/1‑149 (MQ=255) cccaaTCCCGTGGTGACCGTGCCCGGCGCAACGCCCGCCGTCAGcacgggattgggttgggcaggggccagcggcagcgcgtcggcggcggtgggcttttccgcacaggccaggagcaggatgaggctggaggccgcgatcagctggcg < 1:227465‑M2/149‑106 (MQ=255) aTCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGgt < 8:331513/149‑1 (MQ=255) tCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGcacgggattgggttgggcaggggccagcggcagcgcgtcggcggcggtgggcttttccgcacaggccacgagcaggatgaagctggaggccgcgatcagctggcgggttt < 7:59562‑M2/149‑111 (MQ=255) cGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGcacgggattgggttgggcaggggccagcggcagcgcgtcggcggcggtgggcttttccgcacaggccacgagcaggatgaagctggaggccgcgatcagctggcgggtttccc > 8:59562‑M2/1‑36 (MQ=255) gctgacgtcgggcgttgcgccgggcacggtcaccacgggattgggttgggcaggggccagcggcagcgcgtcggcggcggtgggcttttccgcacaggccacgagcaggatgaagctggaggccgcgatcagctggcgggtttcccagc > 1:49347‑M1/1‑1 (MQ=255) | CATGCTCTTCCGTCTTATCCCCCGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCC > NC_002947/5461060‑5461346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |