New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5461198	51 (0.900)	3 (0.050)	3/254	NT	6.1%	coding (138/1317 nt)	PP_4798	membrane‑bound lytic murein transglycosylase
	?	NC_002947	= 5461230	43 (0.780)					coding (170/1317 nt)	PP_4798	membrane‑bound lytic murein transglycosylase

CGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACGTGATCAAGGCAGACCGCAGC  >  NC_002947/5461082‑5461378                                                                                                                                                     |                                                                                                                                                     cGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAg                                                                                                                                                      <  8:337081/149‑1 (MQ=255) cGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAg                                                                                                                                                      <  8:266514/149‑1 (MQ=255)  gCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGc                                                                                                                                                     >  1:49347‑M2/1‑148 (MQ=255)          aCCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACAt                                                                                                                                             <  3:64198/149‑1 (MQ=255)           cccGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATc                                                                                                                                            <  4:78149/149‑1 (MQ=255)                cAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATc                                                                                                                                            <  5:183727/144‑1 (MQ=255)                cAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATc                                                                                                                                            >  6:183727/1‑144 (MQ=255)                       tCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCa                                                                                                                                 >  2:203425/1‑148 (MQ=255)                            gCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCtt                                                                                                                           <  6:308889/149‑1 (MQ=255)                                ccAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGcc                                                                                                                       >  4:299939/1‑149 (MQ=255)                                 cAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGcc                                                                                                                       >  1:215051/1‑148 (MQ=255)                                 cAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGACCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGcc                                                                                                                       >  7:241060/1‑148 (MQ=255)                                    cTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGAGATCCAGCCCCTGCAAACCTTCGCCCAAt                                                                                                                   <  1:203425/149‑1 (MQ=255)                                    cTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAAt                                                                                                                   <  2:215051/149‑1 (MQ=255)                                    cTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCGGCCCAACCCCATCCCGTGGTGACCGTGCCCGGCGCACCGCCCGACGACAGCACTGACATCCAGCCCCTGCCAACCTTCGCCCAAt                                                                                                                   >  2:149183/1‑149 (MQ=255)                                       cATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATg                                                                                                                  <  4:17571/147‑1 (MQ=255)                                              cTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCgg                                                                                                          <  7:264273/148‑1 (MQ=255)                                                 gTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGACCGGCGCAACGCCCGACGTCAGCACTGCCATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCtt                                                                                                      >  6:233650/1‑149 (MQ=255)                                                      cTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCTCTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTcc                                                                                                    <  2:126896/146‑1 (MQ=255)                                                      cTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCTCTGACATACAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTcc                                                                                                    >  1:126896/1‑146 (MQ=255)                                                        gtgCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAg                                                                                               >  4:239832/1‑149 (MQ=255)                                                         tgCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTg                                                                                                                                   >  5:341976/1‑112 (MQ=255)                                                         tgCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTg                                                                                                                                   <  6:341976/112‑1 (MQ=255)                                                           cGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGTAg                                                                                            >  2:14760/1‑149 (MQ=255)                                                                    ccACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGc                                                                                     >  5:205183/1‑147 (MQ=255)                                                                      aCCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCCT‑GTGACCGTGCCCGGCCCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGTCTTCCCCTAGCAGGCCCTGCAAGcc                                                                                >  2:175494/1‑149 (MQ=255)                                                                       ccgccgccgACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGcc                                                                                <  4:123775/149‑1 (MQ=255)                                                                        cgccgccgACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCg                                                                               <  3:239832/149‑1 (MQ=255)                                                                                 cgcgCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGc                                                                      <  3:299939/149‑1 (MQ=255)                                                                                    gcTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGcc                                                                     >  2:122572/1‑147 (MQ=255)                                                                                    gcTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGa                                                                   <  6:205183/149‑1 (MQ=255)                                                                                    gcTGCCGCTGACCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGa                                                                   <  8:241060/149‑1 (MQ=255)                                                                                      tGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAg                                                                  >  8:193748/1‑148 (MQ=255)                                                                                        ccGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCAc                                                               <  2:337256/149‑1 (MQ=255)                                                                                              gCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAg                                                                  >  6:183368/1‑140 (MQ=255)                                                                                              gCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAg                                                                  <  5:183368/140‑1 (MQ=255)                                                                                                       caacccaaTCCCGTGGTGACCGTGCCCGGCGCGACGCGCGACGTGAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCACGCGGGCTTCCGCGAGCCGGCGCTGCAAGCCGGCATTTCGGAGAGCACCTTCGACCGCGCCtt                                                >  8:232586/1‑149 (MQ=255)                                                                                                       caacccaaTCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCtt                                                >  7:331513/1‑149 (MQ=255)                                                                                                          cccaaTCCCGTGGTGACCGTGCCCGGCGCAACGCCCGCCGTCAGcacgggattgggttgggcaggggccagcggcagcgcgtcggcggcggtgggcttttccgcacaggccaggagcaggatgaggctggaggccgcgatcagctggcg                                             <  1:227465‑M2/149‑106 (MQ=255)                                                                                                              aTCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGgt                                         <  8:331513/149‑1 (MQ=255)                                                                                                               tCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGcacgggattgggttgggcaggggccagcggcagcgcgtcggcggcggtgggcttttccgcacaggccacgagcaggatgaagctggaggccgcgatcagctggcgggttt                                        <  7:59562‑M2/149‑111 (MQ=255)                                                                                                                  cGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGcacgggattgggttgggcaggggccagcggcagcgcgtcggcggcggtgggcttttccgcacaggccacgagcaggatgaagctggaggccgcgatcagctggcgggtttccc                                     >  8:59562‑M2/1‑36 (MQ=255)                                                                                                                                 cGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACg                      >  4:99808/1‑149 (MQ=255)                                                                                                                                  ggCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTTCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACGt                     <  1:175494/149‑1 (MQ=255)                                                                                                                                  ggCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACGt                     <  7:193748/149‑1 (MQ=255)                                                                                                                                       aaCGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACGTGATc                 >  4:86769/1‑148 (MQ=255)                                                                                                                                         cGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCAcc                                   >  4:314624/1‑128 (MQ=255)                                                                                                                                         cGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCAcc                                   <  3:314624/128‑1 (MQ=255)                                                                                                                                         cGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACGTGATCAAg              >  4:112248/1‑149 (MQ=255)                                                                                                                                                    aGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACGTGATCAAGGCAGACCGcag   >  5:44759/1‑149 (MQ=255)                                                                                                                                                    aGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACGTGATCAAGGCAGACCGcag   >  5:137471/1‑149 (MQ=255)                                                                                                                                                     gCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACGTGATCAAGGCAGACCGcagc  >  1:166193/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CGCTGGGAAACCCGCCAGCTGATCGCGGCCTCCAGCTTCATCCTGCTCGTGGCCTGTGCGGAAAAGCCCACCGCCGCCGACGCGCTGCCGCTGGCCCCTGCCCAACCCAATCCCGTGGTGACCGTGCCCGGCGCAACGCCCGACGTCAGCACTGACATCCAGCCCCTGCAAACCTTCGCCCAATGGCAAGCGGGCTTCCGCGAGCAGGCCCTGCAAGCCGGCATTTCGCCGAGCACCTTCGACCGCGCCTTCCTCGGTGTCACCCCCGACCTGGACGTGATCAAGGCAGACCGCAGC  >  NC_002947/5461082‑5461378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.