New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5714441	44 (0.780)	3 (0.060)	3/250	NT	6.4%	coding (195/393 nt)	hisI	phosphoribosyl‑AMP cyclohydrolase
	?	NC_002947	= 5714473	46 (0.840)					coding (227/393 nt)	hisI	phosphoribosyl‑AMP cyclohydrolase

GGCGATCGCCCAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTG  >  NC_002947/5714297‑5714581                                                                                                                                                 |                                                                                                                                             ggCGATCGCCCAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGc                                                                                                                                          <  1:31352/149‑1 (MQ=255)   cGATCGCCCAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTAGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCAt                                                                                                                                        <  7:37138/149‑1 (MQ=255)     aTCGCCCAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCAtgt                                                                                                                                      <  7:265317/149‑1 (MQ=255)          ccAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCaa                                                                                                                                  >  7:174064/1‑148 (MQ=255)          ccAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCaa                                                                                                                                  >  1:362124/1‑148 (MQ=255)                ccACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGc                                                                                                                           <  5:245284/149‑1 (MQ=255)                 cacaAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCa                                                                                                                          <  6:232784/149‑1 (MQ=255)                  acaAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCCGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCAt                                                                                                                         >  4:94636/1‑149 (MQ=255)                  acaAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCAt                                                                                                                         <  8:224668/149‑1 (MQ=255)                    aaGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAACGGCGAGGAGTCCGGGCATGTGCTAAAACTGCAt                                                                                                                         >  8:324222/1‑147 (MQ=255)                      gACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGt                                                                                                                     >  8:225138/1‑149 (MQ=255)                        ccGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGtt                                                                                                                    <  8:174064/148‑1 (MQ=255)                                    tgatgaTGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCgg                                                                                                                                            <  3:243758/112‑1 (MQ=255)                                    tgatgaTGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCgg                                                                                                                                            >  4:243758/1‑112 (MQ=255)                                      atgatgGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCaggcgcaactcatgcagtttttgcacatgcccggactcctc                                                                                                     <  1:172595‑M1/149‑42 (MQ=255)                                      atgatgGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACtgt                                                                                                       <  7:225138/147‑1 (MQ=255)                                      atgatgGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGa                                                                                                     >  7:292919/1‑149 (MQ=255)                                        gatgGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGAAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTACGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACg                                                                                                   >  3:321566/1‑149 (MQ=255)                                                     aaCCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGatcat                                                                                      >  3:145920/1‑149 (MQ=255)                                                      aCCGTGAATCGCTGTCCCTGACCGCCGCCGCGCAGCGTGCCATCTACTGGTCGCGTTCCCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACTCCGACGTGatcatc                                                                                     <  6:94278/149‑1 (MQ=255)                                                       ccGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCaggcgcaactcatgcagtttttgcacatgcccggac                                                                                                          <  2:138147‑M1/127‑37 (MQ=255)                                                       ccGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCaggcgcaactcatgcagtttttgcacatgcccggac                                                                                                          >  1:138147‑M1/1‑91 (MQ=255)                                                       ccGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATcc                                                                                    >  2:167068/1‑149 (MQ=255)                                                                gCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGAGGCCGACGTGATCATCCTGATGGTc                                                                            <  8:232862/148‑1 (MQ=255)                                                                 cTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGa                                                                          <  1:167068/149‑1 (MQ=255)                                                                 cTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGa                                                                          <  1:141450/149‑1 (MQ=255)                                                                     cccTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCaa                                                                      <  6:336680/149‑1 (MQ=255)                                                                         gACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGAGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTgg                                                                  >  5:250916/1‑149 (MQ=255)                                                                          acagccgccgAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGTCTAGCTGGGGCGTAAAGGCGTCGAGTCCGGGCATGTGCAAAAACTCCATGAGTAGCGCCTGGACTTTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTggg                                                                 <  8:258919/146‑1 (MQ=255)                                                                            cgccgccgAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGcc                                                               <  2:362124/149‑1 (MQ=255)                                                                                        gcGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATgg                                                                              >  6:269818/1‑122 (MQ=255)                                                                                        gcGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATgg                                                                              <  5:269818/122‑1 (MQ=255)                                                                                           tGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATa                                                >  4:358299/1‑149 (MQ=255)                                                                                            gCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATAc                                               <  8:292919/149‑1 (MQ=255)                                                                                               aTCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTgg                                                                  >  1:161887/1‑127 (MQ=255)                                                                                               aTCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTgg                                                                  <  2:161887/127‑1 (MQ=255)                                                                                                       gTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGa                                      >  5:366288/1‑147 (MQ=255)                                                                                                          gcgttcgcgtGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGaaa                                    >  6:266242/1‑146 (MQ=255)                                                                                                          gcgttcgcgtGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGaaa                                    <  5:266242/146‑1 (MQ=255)                                                                                                               cgctttgCAAGCGGTGGCGTAAAGGCGAGGAGTCCGGGCATGAGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCtt                             <  6:250916/142‑1 (MQ=255)                                                                                                                  gtGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTAc                         >  4:45973/1‑149 (MQ=255)                                                                                                                   tGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTAcc                        >  6:107318/1‑149 (MQ=255)                                                                                                                     gCAAGCTGTGGCGTAAAGGCGAGGAGTCCGTGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACcgc                      <  4:321566/149‑1 (MQ=255)                                                                                                                     gCAAGCTGTGGCGTAAAGGCGAGGAGGCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGCCTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACcgc                      <  6:225818/149‑1 (MQ=255)                                                                                                                      cAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACcgcg                     >  5:351450/1‑149 (MQ=255)                                                                                                                          cTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTa                 <  5:329903/149‑1 (MQ=255)                                                                                                                                cGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGa           <  4:145920/149‑1 (MQ=255)                                                                                                                                 gTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGAc          >  7:157724/1‑149 (MQ=255)                                                                                                                                 gTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGAc          >  7:276932/1‑149 (MQ=255)                                                                                                                                 gTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGAc          >  2:331523/1‑149 (MQ=255)                                                                                                                                         gaggagTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTggactcctcgcctttacgccacagcttgccacgcgaacgcgaccagtagatggcacgctgctcggcggcggtcagggccagcgattcacggttcatccaggccatcat  <  1:172595‑M2/149‑109 (MQ=255)                                                                                                                                              gTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTggactcctcgcctttacgccacagcttgccacgcgaacgcgaccagtagatggcacgctgctcggcggcggtcagggccagcgattcacgg                   <  2:138147‑M2/127‑92 (MQ=255)                                                                                                                                              gTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTggactcctcgcctttacgccacagcttgccacgcgaacgcgaccagtagatggcacgctgctcggcggcggtcagggccagcgattcacgg                   >  1:138147‑M2/1‑36 (MQ=255)                                                                                                                                                 cGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAgctgc                               <  6:357896/112‑1 (MQ=255)                                                                                                                                                 cGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAgctgc                               >  5:357896/1‑112 (MQ=255)                                                                                                                                                 |                                                                                                                                             GGCGATCGCCCAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTG  >  NC_002947/5714297‑5714581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.